RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 SNRNP27Q8WVK2 155 aaKnown RBP20.12■□□□□ 0.81
SDF4-205ENST00000465727 PGBD4Q96DM1 585 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 RANBP9Q96S59 729 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 ANKRD60Q9BZ19 345 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 IL22Q9GZX6 179 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 MAF1Q9H063 256 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 RPAP3Q9H6T3 665 aaPredicted RBP20.12■□□□□ 0.81
SDF4-205ENST00000465727 CLK4Q9HAZ1 481 aaKnown RBP20.12■□□□□ 0.81
SDF4-205ENST00000465727 PGAP2Q9UHJ9 254 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 IPO11Q9UI26 975 aaKnown RBP20.12■□□□□ 0.81
SDF4-205ENST00000465727 A0A096LPK6 155 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 NEMP1O14524 444 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 DGKIO75912 1065 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 VAPBO95292 243 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 FAM163BP0C2L3 166 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 ERVK-10P10266 1014 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 ICAM3P32942 547 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 MSX2P35548 267 aaPredicted RBP20.12■□□□□ 0.81
SDF4-205ENST00000465727 ESRRGP62508 458 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 MXD4Q14582 209 aaPredicted RBP20.12■□□□□ 0.81
SDF4-205ENST00000465727 IL23RQ5VWK5 629 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 DUS3LQ96G46 650 aaKnown RBP20.12■□□□□ 0.81
SDF4-205ENST00000465727 PTPRHQ9HD43 1115 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 OLAHQ9NV23 265 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 SYBUQ9NX95 663 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 DTLQ9NZJ0 730 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 HESX1Q9UBX0 185 aa20.12■□□□□ 0.81
SDF4-205ENST00000465727 PTBP2Q9UKA9 531 aaKnown RBP20.12■□□□□ 0.81
SDF4-205ENST00000465727 GAS2O43903 313 aaKnown RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 HSPA1AP0DMV8 641 aaKnown RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 HSPA1BP0DMV9 641 aaKnown RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 PORP16435 677 aaPredicted RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 YBX3P16989 372 aaKnown RBP eCLIP20.11■□□□□ 0.81
SDF4-205ENST00000465727 MPSTP25325 297 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 PHKA2P46019 1235 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 SLC6A3Q01959 620 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 SP2Q02086 613 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 RHDQ02161 417 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 INCA1Q0VD86 236 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 TRIM25Q14258 630 aaKnown RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 NRF1Q16656 503 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 KCTD21Q4G0X4 260 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 IRAK1BP1Q5VVH5 260 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 LIPMQ5VYY2 423 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 FSTL4Q6MZW2 842 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 TTC30AQ86WT1 665 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 TMIGD2Q96BF3 282 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 ATG4CQ96DT6 458 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 TMEM79Q9BSE2 394 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 CAAP1Q9H8G2 361 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 COQ10BQ9H8M1 238 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 RPF1Q9H9Y2 349 aaKnown RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 TSPAN16Q9UKR8 245 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 BARX2Q9UMQ3 279 aaPredicted RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 WDR37Q9Y2I8 494 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 COL11A1P12107 1806 aaPredicted RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 FER1L6Q2WGJ9 1857 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 TRIM64CA6NLI5 447 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 PIK3R2O00459 728 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 CD1EP15812 388 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 PTPN1P18031 435 aaKnown RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 YY1P25490 414 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 SNX16P57768 344 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 PHEXP78562 749 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 MAMDC4Q6UXC1 1216 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 RNF148Q8N7C7 305 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 AGR3Q8TD06 166 aa20.11■□□□□ 0.81
SDF4-205ENST00000465727 UHRF1Q96T88 793 aaPredicted RBP20.11■□□□□ 0.81
SDF4-205ENST00000465727 A0A1B0GTW7 788 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 GRID2O43424 1007 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 TIMM44O43615 452 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 TFEBP19484 476 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 HADHAP40939 763 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 PTPN9P43378 593 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 PLOD1Q02809 727 aaPredicted RBP20.1■□□□□ 0.81
SDF4-205ENST00000465727 NSUN2Q08J23 767 aaKnown RBP eCLIP20.1■□□□□ 0.81
SDF4-205ENST00000465727 TRAP1Q12931 704 aaKnown RBP20.1■□□□□ 0.81
SDF4-205ENST00000465727 NCBP2-AS2Q69YL0 99 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 SNRNP48Q6IEG0 339 aaKnown RBP20.1■□□□□ 0.81
SDF4-205ENST00000465727 ZYG11AQ6WRX3 759 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 GPR141Q7Z602 305 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 STRA8Q7Z7C7 330 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 ZDHHC17Q8IUH5 632 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 URGCPQ8TCY9 931 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 ATP6V1E2Q96A05 226 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 CSPG4P5Q96PW8 444 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 PHF12Q96QT6 1004 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 GMLQ99445 158 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 EFHD1Q9BUP0 239 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 DHX35Q9H5Z1 703 aaKnown RBP20.1■□□□□ 0.81
SDF4-205ENST00000465727 LRRC40Q9H9A6 602 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 CDH7Q9ULB5 785 aa20.1■□□□□ 0.81
SDF4-205ENST00000465727 MYO18AQ92614 2054 aaKnown RBP20.1■□□□□ 0.81
SDF4-205ENST00000465727 XPO1O14980 1071 aaKnown RBP20.09■□□□□ 0.81
SDF4-205ENST00000465727 AMHP03971 560 aa20.09■□□□□ 0.81
SDF4-205ENST00000465727 CHRNGP07510 517 aa20.09■□□□□ 0.81
SDF4-205ENST00000465727 NDST2P52849 883 aa20.09■□□□□ 0.81
SDF4-205ENST00000465727 DGKZQ13574 1117 aa20.09■□□□□ 0.81
SDF4-205ENST00000465727 ATF7IP2Q5U623 682 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms