RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 TTC17Q96AE7 1141 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 PCDHB18PQ96TA0 734 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 TRMT1Q9NXH9 659 aaKnown RBP18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 KIAA1522Q9P206 1035 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 CKAP5Q14008 2032 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 ACACBO00763 2458 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 A0A1B0GTW7 788 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 METTL12A8MUP2 240 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 RTN2O75298 545 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 IGLV3-25P01717 112 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 H2AFZP0C0S5 128 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 CDH5P33151 784 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 NOMO3P69849 1222 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 CENPCQ03188 943 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 ZBTB16Q05516 673 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 TTC31Q49AM3 519 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 FSCBQ5H9T9 825 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 PITRM1Q5JRX3 1037 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 RNF219Q5W0B1 726 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 MMS22LQ6ZRQ5 1243 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 H2AFVQ71UI9 128 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 ZCCHC9Q8N567 271 aaKnown RBP18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 OR2I1PQ8NGU4 316 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 DNASE2BQ8WZ79 361 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 SNX19Q92543 992 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 LMLNQ96KR4 655 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 SLC2A13Q96QE2 648 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 ISCUQ9H1K1 167 aa18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 INTS6Q9UL03 887 aaKnown RBP18.56■□□□□ 0.56
SQSTM1-204ENST00000453046 KRT86O43790 486 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 RNASEH1O60930 286 aaKnown RBP18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 ERBB2P04626 1255 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 UNGP13051 313 aaPredicted RBP18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 ARHGAP25P42331 645 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 RPS14P62263 151 aaKnown RBP18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 SLC6A3Q01959 620 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 KIF5AQ12840 1032 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 NME3Q13232 169 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 RABGAP1LQ5R372 815 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 ZNF776Q68DI1 518 aaPredicted RBP18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 TMEM35BQ8NCS4 154 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 GANCQ8TET4 914 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 BTBD1Q9H0C5 482 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 MTG2Q9H4K7 406 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 EIF2B4Q9UI10 523 aaKnown RBP18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 NCKAP1Q9Y2A7 1128 aa18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 ASCC3Q8N3C0 2202 aaKnown RBP18.55■□□□□ 0.56
SQSTM1-204ENST00000453046 BTNL10A8MVZ5 291 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 ACSL1P33121 698 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 NSFP46459 744 aaKnown RBP18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 FOXC1Q12948 553 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 SEMA3BQ13214 749 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 HNRNPA1L2Q32P51 320 aaKnown RBP18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 PTPN20Q4JDL3 420 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 TTC39BQ5VTQ0 682 aaPredicted RBP18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 OLFML1Q6UWY5 402 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 TRIM11Q96F44 468 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 ZDHHC5Q9C0B5 715 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 PCED1AQ9H1Q7 454 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 TAS2R14Q9NYV8 317 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 ERVW-1Q9UQF0 538 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 ADAMTS9Q9P2N4 1935 aa18.54■□□□□ 0.56
SQSTM1-204ENST00000453046 ANKRD62A6NC57 917 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 BCAT2O15382 392 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 DAB1O75553 588 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 SRPRAP08240 638 aaKnown RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 TMEM253P0C7T8 217 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 NOS2P35228 1153 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 NNMTP40261 264 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 CTSOP43234 321 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 RNASE9P60153 205 aaKnown RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 SHC2P98077 582 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 ECT2LQ008S8 904 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 SFSWAPQ12872 951 aaKnown RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 GRIK2Q13002 908 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 MTA1Q13330 715 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 EIF4EBP2Q13542 120 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 SLC12A1Q13621 1099 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 NAA35Q5VZE5 725 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 ACAD10Q6JQN1 1059 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 SLC26A9Q7LBE3 791 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 CIR1Q86X95 450 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 PHF13Q86YI8 300 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 ZDHHC17Q8IUH5 632 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 APCDD1Q8J025 514 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 KDM1BQ8NB78 822 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 CTNNBL1Q8WYA6 563 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 MYO19Q96H55 970 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 MRGPRX3Q96LB0 322 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 RPRD1AQ96P16 312 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 PACSIN1Q9BY11 444 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 RSPH9Q9H1X1 276 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 C6orf106Q9H6K1 298 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 DNAAF2Q9NVR5 837 aaKnown RBP18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 SCML1Q9UN30 329 aa18.53■□□□□ 0.56
SQSTM1-204ENST00000453046 CHD8Q9HCK8 2581 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 A0A0A6YYK5 440 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 A0A1B0GVM2 712 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 RCCD1A6NED2 376 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 TCAF2A6NFQ2 919 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms