RNA–Protein interactions for RNA: ENST00000446852.5

SMC6-206, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 1 (best)

Gene SMC6, Length 2,460 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-206ENST00000446852 PHTF1Q9UMS5 762 aa17.84■□□□□ 0.45
SMC6-206ENST00000446852 RPS6KL1Q9Y6S9 549 aa17.84■□□□□ 0.45
SMC6-206ENST00000446852 LAMA2P24043 3122 aaKnown RBP17.84■□□□□ 0.45
SMC6-206ENST00000446852 ADAM12O43184 909 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 RTN3O95197 1032 aaPredicted RBP17.83■□□□□ 0.45
SMC6-206ENST00000446852 HAPLN1P10915 354 aaPredicted RBP17.83■□□□□ 0.45
SMC6-206ENST00000446852 ALADP13716 330 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 MAGEA9P43362 315 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 PSMD5Q16401 504 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.83■□□□□ 0.451e-6■■■■□ 21.8
SMC6-206ENST00000446852 MIB1Q86YT6 1006 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 LRRC43Q8N309 656 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 DNAAF3Q8N9W5 541 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 SRPK1Q96SB4 655 aaKnown RBP17.83■□□□□ 0.45
SMC6-206ENST00000446852 PSAT1Q9Y617 370 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 CDY1Q9Y6F8 540 aa17.83■□□□□ 0.45
SMC6-206ENST00000446852 EDF1O60869 148 aaKnown RBP17.83■□□□□ 0.44
SMC6-206ENST00000446852 UPP2O95045 317 aa17.83■□□□□ 0.44
SMC6-206ENST00000446852 POLBP06746 335 aa17.83■□□□□ 0.44
SMC6-206ENST00000446852 CCNFP41002 786 aa17.83■□□□□ 0.44
SMC6-206ENST00000446852 MNX1P50219 401 aaPredicted RBP17.83■□□□□ 0.44
SMC6-206ENST00000446852 ANKS3Q6ZW76 656 aa17.83■□□□□ 0.44
SMC6-206ENST00000446852 MTBPQ96DY7 904 aa17.83■□□□□ 0.44
SMC6-206ENST00000446852 SPATA17Q96L03 361 aa17.83■□□□□ 0.44
SMC6-206ENST00000446852 KDM4CQ9H3R0 1056 aa17.83■□□□□ 0.44
SMC6-206ENST00000446852 NOL6Q9H6R4 1146 aaKnown RBP17.83■□□□□ 0.44
SMC6-206ENST00000446852 ALG13Q9NP73 1137 aaKnown RBP17.83■□□□□ 0.44
SMC6-206ENST00000446852 H7C4K7 107 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 COPEO14579 308 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 CACNG3O60359 315 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 SLC2A3P11169 496 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 ATF6P18850 670 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 LACTB2Q53H82 288 aaPredicted RBP17.82■□□□□ 0.44
SMC6-206ENST00000446852 MS4A13Q5J8X5 152 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 CERCAMQ5T4B2 595 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 SLC39A5Q6ZMH5 540 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 TRPM8Q7Z2W7 1104 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 KLHDC8BQ8IXV7 354 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 CCDC63Q8NA47 563 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 SPATA22Q8NHS9 363 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 PTPRN2Q92932 1015 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 IL12RB2Q99665 862 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 VPS11Q9H270 941 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 TLR8Q9NR97 1041 aaKnown RBP17.82■□□□□ 0.44
SMC6-206ENST00000446852 GGT7Q9UJ14 662 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 ARL2BPQ9Y2Y0 163 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 STARD13Q9Y3M8 1113 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 MIA3Q5JRA6 1907 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 ERVK-10P10266 1014 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 SERPINB9P50453 376 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 MGAT5Q09328 741 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 TRIM60Q495X7 471 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 C10orf120Q5SQS8 335 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 GIPC2Q8TF65 315 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 GRAMD1AQ96CP6 724 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 VN1R3Q9BXE9 311 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 LRRC40Q9H9A6 602 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 PRDM5Q9NQX1 630 aaPredicted RBP17.82■□□□□ 0.44
SMC6-206ENST00000446852 BFARQ9NZS9 450 aa17.82■□□□□ 0.44
SMC6-206ENST00000446852 WASH4PA8MWX3 477 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 MATN3O15232 486 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 FSBPO95073 299 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 EFEMP2O95967 443 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 PAPOLAP51003 745 aaKnown RBP17.81■□□□□ 0.44
SMC6-206ENST00000446852 TLE2Q04725 743 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 TRIP4Q15650 581 aaPredicted RBP17.81■□□□□ 0.44
SMC6-206ENST00000446852 SPANXN3Q5MJ09 141 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 PACS1Q6VY07 963 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 TFAP2DQ7Z6R9 452 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 TMEM135Q86UB9 458 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 THOC1Q96FV9 657 aaKnown RBP17.81■□□□□ 0.44
SMC6-206ENST00000446852 CERS2Q96G23 380 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 RMDN2Q96LZ7 410 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 MARCH2Q9P0N8 246 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 MAGED2Q9UNF1 606 aaPredicted RBP17.81■□□□□ 0.44
SMC6-206ENST00000446852 MT-CYBP00156 380 aaPredicted RBP17.81■□□□□ 0.44
SMC6-206ENST00000446852 RPL17P18621 184 aaKnown RBP17.81■□□□□ 0.44
SMC6-206ENST00000446852 SMARCB1Q12824 385 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 FAM43BQ6ZT52 329 aaPredicted RBP17.81■□□□□ 0.44
SMC6-206ENST00000446852 FBXO22Q8NEZ5 403 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 CDKL2Q92772 493 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 ZNF669Q96BR6 464 aaPredicted RBP17.81■□□□□ 0.44
SMC6-206ENST00000446852 CCSER2Q9H7U1 834 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 PCMTD2Q9NV79 361 aa17.81■□□□□ 0.44
SMC6-206ENST00000446852 ZCWPW2A0A1B0GU75 182 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 CNTN5O94779 1100 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 HMBSP08397 361 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 TPH1P17752 444 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 PSEN1P49768 467 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 ACTN3Q08043 901 aaPredicted RBP17.8■□□□□ 0.44
SMC6-206ENST00000446852 PRPSAP1Q14558 356 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 ALFQ53S48 1182 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 OTOAQ7RTW8 1153 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 RASSF3Q86WH2 238 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 CHSY1Q86X52 802 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 VWCEQ96DN2 955 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 SLC13A1Q9BZW2 595 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 OLA1Q9NTK5 396 aaKnown RBP17.8■□□□□ 0.44
SMC6-206ENST00000446852 MKS1Q9NXB0 559 aa17.8■□□□□ 0.44
SMC6-206ENST00000446852 ATP9BO43861 1147 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms