RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 WNT9AO14904 365 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 DAB1O75553 588 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 PNMA6AP0CW24 399 aaPredicted RBP14.94□□□□□ -0.02
SDC1-204ENST00000429035 ZNF18P17022 549 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 CCR5P51681 352 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 CLDN6P56747 220 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 CYP4F3Q08477 520 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 SLC12A1Q13621 1099 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 KCNJ12Q14500 433 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 ARID5BQ14865 1188 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 EFHC1Q5JVL4 640 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 CXorf57Q6NSI4 855 aaKnown RBP14.94□□□□□ -0.02
SDC1-204ENST00000429035 FBXL22Q6P050 247 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 C11orf57Q6ZUT1 292 aaPredicted RBP14.94□□□□□ -0.02
SDC1-204ENST00000429035 Q6ZVU0 165 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 DSG4Q86SJ6 1040 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 HNRNPLLQ8WVV9 542 aaKnown RBP14.94□□□□□ -0.02
SDC1-204ENST00000429035 SLC2A13Q96QE2 648 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 SPAG5Q96R06 1193 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 PRMT1Q99873 361 aaKnown RBP14.94□□□□□ -0.02
SDC1-204ENST00000429035 SIK2Q9H0K1 926 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 MUC3BQ9H195 1237 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 PDCL3Q9H2J4 239 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 PLCB1Q9NQ66 1216 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 RWDD2AQ9UIY3 292 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 VPS28Q9UK41 221 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 GPSM3Q9Y4H4 160 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 FREM2Q5SZK8 3169 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 MYLKQ15746 1914 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.93□□□□□ -0.02
SDC1-204ENST00000429035 RTN2O75298 545 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 LDOC1O95751 146 aaPredicted RBP14.93□□□□□ -0.02
SDC1-204ENST00000429035 ERBB2P04626 1255 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 CAPNS1P04632 268 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 DRD3P35462 400 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 KRT9P35527 623 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 OXCT1P55809 520 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 PTK2Q05397 1052 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 DNAJC3Q13217 504 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 ZNF177Q13360 481 aaPredicted RBP14.93□□□□□ -0.02
SDC1-204ENST00000429035 AUHQ13825 339 aaKnown RBP14.93□□□□□ -0.02
SDC1-204ENST00000429035 NAPEPLDQ6IQ20 393 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 PRPF39Q86UA1 669 aaKnown RBP14.93□□□□□ -0.02
SDC1-204ENST00000429035 EID2Q8N6I1 236 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 MYOCQ99972 504 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 ASNSD1Q9NWL6 643 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 AJAP1Q9UKB5 411 aaPredicted RBP14.93□□□□□ -0.02
SDC1-204ENST00000429035 HS3ST4Q9Y661 456 aa14.93□□□□□ -0.02
SDC1-204ENST00000429035 A0A1W2PR77 199 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 TRABD2BA6NFA1 517 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 M0QYT0 321 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 YKT6O15498 198 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 RFPL3O75679 317 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 DKK1O94907 266 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 RHOCP08134 193 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 GLI1P08151 1106 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 EPHA8P29322 1005 aaPredicted RBP14.92□□□□□ -0.02
SDC1-204ENST00000429035 ARRB1P49407 418 aaPredicted RBP14.92□□□□□ -0.02
SDC1-204ENST00000429035 SULT1E1P49888 294 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 RNASE9P60153 205 aaKnown RBP14.92□□□□□ -0.02
SDC1-204ENST00000429035 PTPN20Q4JDL3 420 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 FAM46CQ5VWP2 391 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 OLFML1Q6UWY5 402 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 PDZD3Q86UT5 571 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 OR52K2Q8NGK3 314 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 PIP4K2CQ8TBX8 421 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 SHC3Q92529 594 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 DCBLD2Q96PD2 775 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 SARDHQ9UL12 918 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 PCDHGC3Q9UN70 934 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 SNX10Q9Y5X0 201 aa14.92□□□□□ -0.02
SDC1-204ENST00000429035 URB1O60287 2271 aaKnown RBP14.91□□□□□ -0.02
SDC1-204ENST00000429035 TLR4O00206 839 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 PES1O00541 588 aaKnown RBP14.91□□□□□ -0.02
SDC1-204ENST00000429035 SDC3O75056 442 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 PAGE1O75459 146 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 PON1P27169 355 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 HNF1BP35680 557 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 SNX16P57768 344 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 NXPH1P58417 271 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 CNTN1Q12860 1018 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 RAPGEF1Q13905 1077 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 SHBQ15464 509 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 DLG2Q15700 870 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 C14orf80Q86SX3 495 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 SLC47A2Q86VL8 602 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 OXR1Q8N573 874 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 WDTC1Q8N5D0 677 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 FRS2Q8WU20 508 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 LRIG1Q96JA1 1093 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 PPP1R9BQ96SB3 815 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 KIAA1468Q9P260 1216 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 DNAJC12Q9UKB3 198 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 TPX2Q9ULW0 747 aaKnown RBP14.91□□□□□ -0.02
SDC1-204ENST00000429035 CA5BQ9Y2D0 317 aa14.91□□□□□ -0.02
SDC1-204ENST00000429035 ATRXP46100 2492 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 KPNA3O00505 521 aaPredicted RBP14.9□□□□□ -0.02
SDC1-204ENST00000429035 SLC7A4O43246 635 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 PLRG1O43660 514 aaKnown RBP14.9□□□□□ -0.02
SDC1-204ENST00000429035 SNAP91O60641 907 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms