RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 Q6ZVU0 165 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 SND1Q7KZF4 910 aaKnown RBP eCLIP11.91□□□□□ -0.5
USP4-204ENST00000416417 TMPRSS7Q7RTY8 843 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 KDM1BQ8NB78 822 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 ALG14Q96F25 216 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 SERAC1Q96JX3 654 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 MYOCQ99972 504 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 FZD4Q9ULV1 537 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 A0A1B0GVM2 712 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 TCAF2A6NFQ2 919 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 I6L893 689 aaPredicted RBP11.91□□□□□ -0.5
USP4-204ENST00000416417 M0QYT0 321 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 RNF103O00237 685 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 TNFSF14O43557 240 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 PCDHGA12O60330 932 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 SNAP91O60641 907 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 HSF2BPO75031 334 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 PAGE1O75459 146 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 DKK1O94907 266 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 ADCY5O95622 1261 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 ADH1BP00325 375 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 MT-CO1P00395 513 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 C5AR1P21730 350 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 CYP4F3Q08477 520 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 DLG2Q15700 870 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 EFHC1Q5JVL4 640 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 TAF3Q5VWG9 929 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 EID2Q8N6I1 236 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 HNRNPLLQ8WVV9 542 aaKnown RBP11.91□□□□□ -0.5
USP4-204ENST00000416417 KLK6Q92876 244 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 ELF4Q99607 663 aaPredicted RBP11.91□□□□□ -0.5
USP4-204ENST00000416417 FEM1AQ9BSK4 669 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 SYNCQ9H7C4 482 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 PIGVQ9NUD9 493 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 FTSJ1Q9UET6 329 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 PCDHGC3Q9UN70 934 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 PKD1L2Q7Z442 2459 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 ITPR1Q14643 2758 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 PTPRBP23467 1997 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.9□□□□□ -0.5
USP4-204ENST00000416417 TRABD2BA6NFA1 517 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 C10orf142B7Z368 130 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 K7ERQ8 282 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 DAB1O75553 588 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 ITGAVP06756 1048 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 KRT9P35527 623 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 NNMTP40261 264 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 CCR5P51681 352 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 PLK1P53350 603 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 SLC6A3Q01959 620 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 PTK2Q05397 1052 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 CNTN1Q12860 1018 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 ZNF177Q13360 481 aaPredicted RBP11.9□□□□□ -0.5
USP4-204ENST00000416417 COL9A2Q14055 689 aaPredicted RBP11.9□□□□□ -0.5
USP4-204ENST00000416417 ELAVL3Q14576 367 aaKnown RBP11.9□□□□□ -0.5
USP4-204ENST00000416417 TPD52L1Q16890 204 aaPredicted RBP11.9□□□□□ -0.5
USP4-204ENST00000416417 COL28A1Q2UY09 1125 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 ALFQ53S48 1182 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 DPY19L2P1Q6NXN4 242 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 LINGO4Q6UY18 593 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 SPATS2Q86XZ4 545 aaKnown RBP11.9□□□□□ -0.5
USP4-204ENST00000416417 MUC3BQ9H195 1237 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 ASNSD1Q9NWL6 643 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 ARHGAP20Q9P2F6 1191 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 SLC25A13Q9UJS0 675 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 VPS28Q9UK41 221 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 GPSM3Q9Y4H4 160 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 OR51B4Q9Y5P0 310 aa11.9□□□□□ -0.5
USP4-204ENST00000416417 NYNRINQ9P2P1 1898 aaKnown RBP11.89□□□□□ -0.51
USP4-204ENST00000416417 ZFYVE26Q68DK2 2539 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 TLR4O00206 839 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 ENDOD1O94919 500 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 LDOC1O95751 146 aaPredicted RBP11.89□□□□□ -0.51
USP4-204ENST00000416417 GLI1P08151 1106 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 SLC2A3P11169 496 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 ZNF18P17022 549 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 GLDCP23378 1020 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 SULT1E1P49888 294 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 NXPH1P58417 271 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 UBE2HP62256 183 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 SFSWAPQ12872 951 aaKnown RBP11.89□□□□□ -0.51
USP4-204ENST00000416417 SLC12A1Q13621 1099 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 RAPGEF1Q13905 1077 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 TFAP2DQ7Z6R9 452 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 PIP4K2CQ8TBX8 421 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 SAP25Q8TEE9 199 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 OR8D1Q8WZ84 308 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 CNDP2Q96KP4 475 aaKnown RBP11.89□□□□□ -0.51
USP4-204ENST00000416417 SPAG5Q96R06 1193 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 TBCBQ99426 244 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 PSMB7Q99436 277 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 TKTL2Q9H0I9 626 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 GDF3Q9NR23 364 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 MPP6Q9NZW5 540 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 FHOD1Q9Y613 1164 aa11.89□□□□□ -0.51
USP4-204ENST00000416417 GOLGA8SH3BPF8 625 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 PES1O00541 588 aaKnown RBP11.88□□□□□ -0.51
USP4-204ENST00000416417 ENC1O14682 589 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 SMAD6O43541 496 aaKnown RBP11.88□□□□□ -0.51
USP4-204ENST00000416417 ATP9BO43861 1147 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms