RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 SNRPD1P62314 119 aaKnown RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 ADAM17P78536 824 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 FASTKD1Q53R41 847 aaKnown RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 C3orf62Q6ZUJ4 267 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 C16orf59Q7L2K0 433 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 SPATA13Q96N96 652 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 GPR62Q9BZJ7 368 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 VPS11Q9H270 941 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 LRRC19Q9H756 370 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 C20orf96Q9NUD7 363 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 PSME4Q14997 1843 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 KCNK1O00180 336 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 PEX14O75381 377 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 TACR2P21452 398 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 CTGFP29279 349 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 NPY2RP49146 381 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 AARSP49588 968 aaKnown RBP eCLIP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 MGAT3Q09327 533 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 LRRC26Q2I0M4 334 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 PARP15Q460N3 678 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 ATP13A4Q4VNC1 1196 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 TBC1D1Q86TI0 1168 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 BLOC1S5Q8TDH9 187 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 APOL5Q9BWW9 433 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 PITPNM3Q9BZ71 974 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 KCNU1A8MYU2 1149 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 SPTLC1O15269 473 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 MSI1O43347 362 aaKnown RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 ITGAVP06756 1048 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 HNRNPA1P09651 372 aaKnown RBP eCLIP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 SERPINA4P29622 427 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 AKT1P31749 480 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 BCL2L1Q07817 233 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 TSTA3Q13630 321 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 ERAP2Q6P179 960 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 KDM7AQ6ZMT4 941 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 FRA10AC1Q70Z53 315 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 GET4Q7L5D6 327 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 AUTS2Q8WXX7 1259 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 HAPLN3Q96S86 360 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 FICDQ9BVA6 458 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 PRDM12Q9H4Q4 367 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 FBXL21Q9UKT6 434 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 CPQQ9Y646 472 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 RPS6KL1Q9Y6S9 549 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 A0A1B0GVM2 712 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 TCAF2A6NFQ2 919 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 MEIS3P2A8K0S8 358 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 IRAK2O43187 625 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 ASMTLO95671 621 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 RBL1P28749 1068 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 MAPKAPK2P49137 400 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 RPS6KA2Q15349 733 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 SYCP2LQ5T4T6 812 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 SCAMP5Q8TAC9 235 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 CSPG4P5Q96PW8 444 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 SMOQ99835 787 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 ALG13Q9NP73 1137 aaKnown RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 NDFIP2Q9NV92 336 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 PSMC3IPQ9P2W1 217 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-211ENST00000413186 FBXW11Q9UKB1 542 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 TLR6Q9Y2C9 796 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 ATAD5Q96QE3 1844 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 GRIN2DO15399 1336 aa8.7□□□□□ -1.02
SYNE1-211ENST00000413186 FOCADQ5VW36 1801 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 LIG3P49916 1009 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 ZBTB6Q15916 424 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 KYNUQ16719 465 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 FNDC3BQ53EP0 1204 aaKnown RBP8.69□□□□□ -1.02
SYNE1-211ENST00000413186 RARS2Q5T160 578 aaKnown RBP8.69□□□□□ -1.02
SYNE1-211ENST00000413186 KIAA2013Q8IYS2 634 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 CASKIN2Q8WXE0 1202 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 LRRC39Q96DD0 335 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 LMAN2LQ9H0V9 348 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 BRD9Q9H8M2 597 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 CACYBPQ9HB71 228 aaKnown RBP8.69□□□□□ -1.02
SYNE1-211ENST00000413186 GDF3Q9NR23 364 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 PCYOX1Q9UHG3 505 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 CRLS1Q9UJA2 301 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 MAP2K7O14733 419 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 LIASO43766 372 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 SNX2O60749 519 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 SNCBQ16143 134 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 ZNF284Q2VY69 593 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 CCDC33Q8N5R6 958 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 ARL14EPQ8N8R7 260 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-211ENST00000413186 LRRC57Q8N9N7 239 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 NDRG1Q92597 394 aaKnown RBP8.69□□□□□ -1.02
SYNE1-211ENST00000413186 PBXIP1Q96AQ6 731 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 FGFR1OP2Q9NVK5 253 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 DEC1Q9P2X7 70 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 COG5Q9UP83 839 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 MYO9BQ13459 2157 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 CTSAP10619 480 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 ITGALP20701 1170 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 MARCKSL1P49006 195 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 RGS4P49798 205 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 CDH4P55283 916 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 FAM189BP81408 668 aa8.69□□□□□ -1.02
SYNE1-211ENST00000413186 ARMC12Q5T9G4 340 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms