RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 LPCAT1Q8NF37 534 aa7.45□□□□□ -1.22
SCN9A-202ENST00000409435 OR10G6Q8NH81 332 aa7.45□□□□□ -1.22
SCN9A-202ENST00000409435 RNASE11Q8TAA1 199 aaKnown RBP7.45□□□□□ -1.22
SCN9A-202ENST00000409435 MDM1Q8TC05 714 aa7.45□□□□□ -1.22
SCN9A-202ENST00000409435 TMEM159Q96B96 161 aa7.45□□□□□ -1.22
SCN9A-202ENST00000409435 LGMNQ99538 433 aa7.45□□□□□ -1.22
SCN9A-202ENST00000409435 PHF7Q9BWX1 381 aaPredicted RBP7.45□□□□□ -1.22
SCN9A-202ENST00000409435 GJB4Q9NTQ9 266 aa7.45□□□□□ -1.22
SCN9A-202ENST00000409435 TRIM10Q9UDY6 481 aa7.45□□□□□ -1.22
SCN9A-202ENST00000409435 RABGEF1Q9UJ41 708 aa7.45□□□□□ -1.22
SCN9A-202ENST00000409435 ATRNL1Q5VV63 1379 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 RFXAPO00287 272 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 TRIM13O60858 407 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 SEC24DO94855 1032 aaPredicted RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 MFN2O95140 757 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 CRTAMO95727 393 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 MSL3P1P0C860 447 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 CCDC130P13994 396 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 SERPINB8P50452 374 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 BCAP31P51572 246 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 TAF10Q12962 218 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 DMC1Q14565 340 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 UNC93AQ86WB7 457 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 HID1Q8IV36 788 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 MAGEC3Q8TD91 643 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 TASP1Q9H6P5 420 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ELAC1Q9H777 363 aaKnown RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 LIMA1Q9UHB6 759 aaKnown RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 MAN1B1Q9UKM7 699 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 SORCS3Q9UPU3 1222 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ZNF862O60290 1169 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 OR4Q2P0C623 313 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 GUCA1AP43080 201 aaPredicted RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 GEMP55040 296 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 LPIN1Q14693 890 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 MORF4L2Q15014 288 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ZNF776Q68DI1 518 aaPredicted RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 DNAJB7Q7Z6W7 309 aaPredicted RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 IL31RAQ8NI17 732 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 BTBD6Q96KE9 485 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 DEPDC7Q96QD5 511 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 SAMSN1Q9NSI8 373 aaKnown RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 YIPF1Q9Y548 306 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 CLUHO75153 1309 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 A0A0U1RQF3 1178 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 EXOC1LA0A1B0GW35 172 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 A0A1W2PRG6 482 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 EIF3HO15372 352 aaKnown RBP eCLIP7.44□□□□□ -1.222e-6■■■■□ 19.8
SCN9A-202ENST00000409435 AVILO75366 819 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ZNF865P0CJ78 1059 aaPredicted RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 TYMPP19971 482 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 CAPZA2P47755 286 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 RCN1Q15293 331 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 RAP1GAP2Q684P5 730 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 BRSK2Q8IWQ3 736 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 MMGT1Q8N4V1 131 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ANKS1AQ92625 1134 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 KRT35Q92764 455 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 SMARCD2Q92925 531 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 AGAP3Q96P47 875 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 OSBPL10Q9BXB5 764 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 PRRG4Q9BZD6 226 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 KDM4CQ9H3R0 1056 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 EURLQ9NYK6 297 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ZFATQ9P243 1243 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 PGAP2Q9UHJ9 254 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 DAPK2Q9UIK4 370 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 PYCARDQ9ULZ3 195 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 MTMR6Q9Y217 621 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 TMEM150BA6NC51 233 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 AHCYL1O43865 530 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 CHRNA1P02708 482 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ARF4P18085 180 aaPredicted RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 GJA5P36382 358 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 SLC11A1P49279 550 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 FOXC1Q12948 553 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 PIGHQ14442 188 aaPredicted RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 KIF19Q2TAC6 998 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 P3H1Q32P28 736 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ZCWPW2Q504Y3 356 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 GPR141Q7Z602 305 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 MICU2Q8IYU8 434 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 SLC35F6Q8N357 371 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 NXPE3Q969Y0 559 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 RERGQ96A58 199 aaPredicted RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 ACO2Q99798 780 aaKnown RBP7.44□□□□□ -1.22
SCN9A-202ENST00000409435 PTPN18Q99952 460 aa7.44□□□□□ -1.22
SCN9A-202ENST00000409435 CCDC22O60826 627 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 HSPA4LO95757 839 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 LTFP02788 710 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CHRNA3P32297 505 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SOX6P35712 828 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SESN2P58004 480 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 FAPQ12884 760 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SEMA3FQ13275 785 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CAPSQ13938 189 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 TOB2Q14106 344 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 INPP5AQ14642 412 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PON2Q15165 354 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms