RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 CASS4Q9NQ75 786 aa19.38■□□□□ 0.69
USP39-202ENST00000409025 TMEM248Q9NWD8 314 aa19.38■□□□□ 0.69
USP39-202ENST00000409025 SYBUQ9NX95 663 aa19.38■□□□□ 0.69
USP39-202ENST00000409025 MOCS1Q9NZB8 636 aa19.38■□□□□ 0.69
USP39-202ENST00000409025 SPG21Q9NZD8 308 aa19.38■□□□□ 0.69
USP39-202ENST00000409025 SAMD15Q9P1V8 674 aa19.38■□□□□ 0.69
USP39-202ENST00000409025 HBS1LQ9Y450 684 aaKnown RBP19.38■□□□□ 0.69
USP39-202ENST00000409025 IGLV3-10A0A075B6K4 115 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 TRIM43BA6NCK2 446 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 TYROBPO43914 113 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 KRT37O76014 449 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 SEC24AO95486 1093 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 RAG1P15918 1043 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 ITGB8P26012 769 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 ATP5C1P36542 298 aaKnown RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 QPCTQ16769 361 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 RAP1GAP2Q684P5 730 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 TRMT10BQ6PF06 316 aaKnown RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 SPATS2Q86XZ4 545 aaKnown RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 CNTD1Q8N815 330 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 DNAAF3Q8N9W5 541 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 DENND1AQ8TEH3 1009 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 TRIM43Q96BQ3 446 aaPredicted RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 MAGEB18Q96M61 343 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 ZNF512Q96ME7 567 aaPredicted RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 NSRP1Q9H0G5 558 aaKnown RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 SMYD2Q9NRG4 433 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 BFARQ9NZS9 450 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 DNMT3LQ9UJW3 386 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 MRPL42Q9Y6G3 142 aaKnown RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 AP3B1O00203 1094 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 KIAA0355O15063 1070 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 CACNG3O60359 315 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 ALDH1A2O94788 518 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 CSH1P0DML2 217 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 CSH2P0DML3 217 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 ANO4Q32M45 955 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 GKAP1Q5VSY0 366 aaPredicted RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 FBXL22Q6P050 247 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 TMEM199Q8N511 208 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 TTC17Q96AE7 1141 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 PAIP2Q9BPZ3 127 aaKnown RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 CYP4F11Q9HBI6 524 aa19.37■□□□□ 0.69
USP39-202ENST00000409025 AAR2Q9Y312 384 aaKnown RBP19.37■□□□□ 0.69
USP39-202ENST00000409025 USP12O75317 370 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 NEBLO76041 1014 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 ZWINTO95229 277 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 URODP06132 367 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 POLBP06746 335 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 SNRPAP09012 282 aaKnown RBP19.36■□□□□ 0.69
USP39-202ENST00000409025 RPA3P35244 121 aaPredicted RBP19.36■□□□□ 0.69
USP39-202ENST00000409025 ALDH1A3P47895 512 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 WDR4P57081 412 aaKnown RBP19.36■□□□□ 0.69
USP39-202ENST00000409025 OLIG2Q13516 323 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 SNX30Q5VWJ9 437 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 NAPEPLDQ6IQ20 393 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 MICALCLQ6ZW33 695 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 OTOP3Q7RTS5 596 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 TFAP2DQ7Z6R9 452 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 DDX53Q86TM3 631 aaKnown RBP19.36■□□□□ 0.69
USP39-202ENST00000409025 CDKL2Q92772 493 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 PPP1R2P1Q96PQ5 205 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 FCRL5Q96RD9 977 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 NACA2Q9H009 215 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 GLOD4Q9HC38 313 aa19.36■□□□□ 0.69
USP39-202ENST00000409025 IPO11Q9UI26 975 aaKnown RBP19.36■□□□□ 0.69
USP39-202ENST00000409025 NYNRINQ9P2P1 1898 aaKnown RBP19.36■□□□□ 0.69
USP39-202ENST00000409025 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.35■□□□□ 0.69
USP39-202ENST00000409025 DRGXA6NNA5 263 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 TCP11X1B4DZS4 312 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 FAM155BO75949 473 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 KRT38O76015 456 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 ANXA9O76027 345 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 CNTN5O94779 1100 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 ASMTLO95671 621 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 NPY2RP49146 381 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 CRYMQ14894 314 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 TAF12Q16514 161 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 ALFQ53S48 1182 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 SPANXN3Q5MJ09 141 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 NECAB2Q7Z6G3 386 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 LINC00523Q86TU6 105 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 CHSY1Q86X52 802 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 KLHDC8BQ8IXV7 354 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 IGSF8Q969P0 613 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 OXNAD1Q96HP4 312 aaPredicted RBP19.35■□□□□ 0.69
USP39-202ENST00000409025 NOL6Q9H6R4 1146 aaKnown RBP19.35■□□□□ 0.69
USP39-202ENST00000409025 DOCK4Q8N1I0 1966 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 TRIM49D1C9J1S8 452 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 SERPINB9P50453 376 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 SEPT7Q16181 437 aaKnown RBP19.35■□□□□ 0.69
USP39-202ENST00000409025 HECTD3Q5T447 861 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 CACNA2D3Q8IZS8 1091 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 BANPQ8N9N5 519 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 MTBPQ96DY7 904 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 SEC16BQ96JE7 1060 aa19.35■□□□□ 0.69
USP39-202ENST00000409025 RPRD1AQ96P16 312 aaPredicted RBP19.35■□□□□ 0.69
USP39-202ENST00000409025 TGS1Q96RS0 853 aaKnown RBP19.35■□□□□ 0.69
USP39-202ENST00000409025 RBM22Q9NW64 420 aaKnown RBP eCLIP19.35■□□□□ 0.69
USP39-202ENST00000409025 UBP1Q9NZI7 540 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms