RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZNF572Q7Z3I7 529 aaPredicted RBP18.5■□□□□ 0.55
SDC1-203ENST00000403076 LRRC49Q8IUZ0 686 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 CDKL3Q8IVW4 592 aaPredicted RBP18.5■□□□□ 0.55
SDC1-203ENST00000403076 ADHFE1Q8IWW8 467 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 CCDC105Q8IYK2 499 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 OR52K2Q8NGK3 314 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 SLC35B2Q8TB61 432 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 LRRN4Q8WUT4 740 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 TFB1MQ8WVM0 346 aaKnown RBP18.5■□□□□ 0.55
SDC1-203ENST00000403076 ARHGEF2Q92974 986 aaKnown RBP18.5■□□□□ 0.55
SDC1-203ENST00000403076 CCDC114Q96M63 670 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 OLFM3Q96PB7 478 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 LGMNQ99538 433 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 FERMT1Q9BQL6 677 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 BRD8Q9H0E9 1235 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 ATP13A1Q9HD20 1204 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 ABCB8Q9NUT2 735 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 PRKAG3Q9UGI9 489 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 VPS28Q9UK41 221 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 HPCAL4Q9UM19 191 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 NUP205Q92621 2012 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 HACD1B0YJ81 288 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 LOC730098B7Z3J9 87 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 CACNG3O60359 315 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 MZF1P28698 734 aaPredicted RBP18.49■□□□□ 0.55
SDC1-203ENST00000403076 CHRNA3P32297 505 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 CD70P32970 193 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 ACVRL1P37023 503 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 COILP38432 576 aaPredicted RBP18.49■□□□□ 0.55
SDC1-203ENST00000403076 KCNJ1P48048 391 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 DGKGP49619 791 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 CYP1B1Q16678 543 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 RNF43Q68DV7 783 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 CCDC137Q6PK04 289 aaKnown RBP18.49■□□□□ 0.55
SDC1-203ENST00000403076 C12orf50Q8NA57 414 aaPredicted RBP18.49■□□□□ 0.55
SDC1-203ENST00000403076 KRT12Q99456 494 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 FEM1AQ9BSK4 669 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 C10orf88Q9H8K7 445 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 DEC1Q9P2X7 70 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 IPO11Q9UI26 975 aaKnown RBP18.49■□□□□ 0.55
SDC1-203ENST00000403076 GJA4P35212 333 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 SERINC3Q13530 473 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 SLC12A1Q13621 1099 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 SLC45A4Q5BKX6 768 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 GRAMD4Q6IC98 578 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 ARHGAP36Q6ZRI8 547 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 GSTA5Q7RTV2 222 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 ATL2Q8NHH9 583 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 NKD2Q969F2 451 aaPredicted RBP18.49■□□□□ 0.55
SDC1-203ENST00000403076 QKIQ96PU8 341 aaKnown RBP eCLIP18.49■□□□□ 0.55
SDC1-203ENST00000403076 SP110Q9HB58 689 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 SEPT10Q9P0V9 454 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 FEZ2Q9UHY8 353 aaPredicted RBP18.49■□□□□ 0.55
SDC1-203ENST00000403076 GGA2Q9UJY4 613 aa18.49■□□□□ 0.55
SDC1-203ENST00000403076 DRG1Q9Y295 367 aaKnown RBP18.49■□□□□ 0.55
SDC1-203ENST00000403076 CBX4O00257 560 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 TULP3O75386 442 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 PABPC1P11940 636 aaKnown RBP18.48■□□□□ 0.55
SDC1-203ENST00000403076 HLA-FP30511 346 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 SLC6A11P48066 632 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 FNTAP49354 379 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 LMNB2Q03252 620 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 HEATR6Q6AI08 1181 aaKnown RBP18.48■□□□□ 0.55
SDC1-203ENST00000403076 ASTLQ6HA08 431 aaPredicted RBP18.48■□□□□ 0.55
SDC1-203ENST00000403076 DRICH1Q6PGQ1 229 aaPredicted RBP18.48■□□□□ 0.55
SDC1-203ENST00000403076 C12orf40Q86WS4 652 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 CCDC13Q8IYE1 715 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 NSMCE1Q8WV22 266 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 HDAC11Q96DB2 347 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 RUNDC3BQ96NL0 473 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 TMEM121Q9BTD3 319 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 FBXO10Q9UK96 956 aa18.48■□□□□ 0.55
SDC1-203ENST00000403076 KIF26AQ9ULI4 1882 aaPredicted RBP18.47■□□□□ 0.55
SDC1-203ENST00000403076 BCLAF3A2AJT9 711 aaKnown RBP18.47■□□□□ 0.55
SDC1-203ENST00000403076 CFAP69A5D8W1 941 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 SGK1O00141 431 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 ARNTLO00327 626 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 TRIM24O15164 1050 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 KCNN4O15554 427 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 NEBLO76041 1014 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 CCNCP24863 283 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 RBL1P28749 1068 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 ZP2Q05996 745 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 PPIDQ08752 370 aaKnown RBP18.47■□□□□ 0.55
SDC1-203ENST00000403076 TDGQ13569 410 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 OASLQ15646 514 aaKnown RBP18.47■□□□□ 0.55
SDC1-203ENST00000403076 PLEKHG6Q3KR16 790 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 TIGD7Q6NT04 549 aaPredicted RBP18.47■□□□□ 0.55
SDC1-203ENST00000403076 TTC27Q6P3X3 843 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 APCDD1Q8J025 514 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 GRK7Q8WTQ7 553 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 ATXN2LQ8WWM7 1075 aaKnown RBP18.47■□□□□ 0.55
SDC1-203ENST00000403076 TSGA13Q96PP4 275 aa18.47■□□□□ 0.55
SDC1-203ENST00000403076 C2orf49Q9BVC5 232 aaPredicted RBP18.47■□□□□ 0.55
SDC1-203ENST00000403076 J3KR12 359 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 KDELR3O43731 214 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 MAFKO60675 156 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 SLU7O95391 586 aaKnown RBP18.46■□□□□ 0.55
SDC1-203ENST00000403076 IFNB1P01574 187 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 ITGAVP06756 1048 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms