RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 GALK1P51570 392 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 ZNF423Q2M1K9 1284 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 PKDCCQ504Y2 493 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 LRRC8BQ6P9F7 803 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 RNF169Q8NCN4 708 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 IARS2Q9NSE4 1012 aaKnown RBP21.42■■□□□ 1.02
CTCF-202ENST00000401394 RIMS3Q9UJD0 308 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 NEMP2A6NFY4 417 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 CLDN5O00501 218 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 SLC5A2P31639 672 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 DCAF6Q58WW2 860 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 PITRM1Q5JRX3 1037 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 IL23RQ5VWK5 629 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 LAYNQ6UX15 382 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 KDELC2Q7Z4H8 507 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 DGCR14Q96DF8 476 aaKnown RBP21.41■■□□□ 1.02
CTCF-202ENST00000401394 SLC4A5Q9BY07 1137 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 FRMD8Q9BZ67 464 aaPredicted RBP21.41■■□□□ 1.02
CTCF-202ENST00000401394 GOLGA2P5Q9HBQ8 144 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 ATXN10Q9UBB4 475 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 C7orf72A4D263 438 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 PLOD2O00469 737 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 CASQ2O14958 399 aaPredicted RBP21.41■■□□□ 1.02
CTCF-202ENST00000401394 GLDCP23378 1020 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 GP5P40197 560 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 GRIA4P48058 902 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 CDH15P55291 814 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 TNFAIP1Q13829 316 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 CYP2R1Q6VVX0 501 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 KBTBD7Q8WVZ9 684 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 ABTB1Q969K4 478 aaPredicted RBP21.41■■□□□ 1.02
CTCF-202ENST00000401394 TASP1Q9H6P5 420 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 USP3Q9Y6I4 520 aa21.41■■□□□ 1.02
CTCF-202ENST00000401394 I6L893 689 aaPredicted RBP21.4■■□□□ 1.02
CTCF-202ENST00000401394 INSRRP14616 1297 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 GRK2P25098 689 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 SYPL2Q5VXT5 272 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 GK5Q6ZS86 529 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 TMEM110Q86TL2 294 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 DEFB106AQ8N104 65 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 KCTD4Q8WVF5 259 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 SOCS7O14512 581 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 GRID2O43424 1007 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 BEST1O76090 585 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 ZNF286BP0CG31 522 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 ALOX15P16050 662 aaPredicted RBP21.4■■□□□ 1.02
CTCF-202ENST00000401394 NUMBP49757 651 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 EN1Q05925 392 aaPredicted RBP21.4■■□□□ 1.02
CTCF-202ENST00000401394 CDK18Q07002 472 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 HFE2Q6ZVN8 426 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 ZBTB46Q86UZ6 589 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 CCNYL1Q8N7R7 359 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 RIN3Q8TB24 985 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 JADE3Q92613 823 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 RTKNQ9BST9 563 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 NMRAL1Q9HBL8 299 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 STK39Q9UEW8 545 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 PHF24Q9UPV7 400 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 LAMA3Q16787 3333 aa21.4■■□□□ 1.02
CTCF-202ENST00000401394 MX2P20592 715 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 SOX11P35716 441 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 OAZ1P54368 228 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 INCA1Q0VD86 236 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 GRM3Q14832 879 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 MYBPC3Q14896 1274 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 KYQ8NBH2 561 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 URGCPQ8TCY9 931 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 KCNN1Q92952 543 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 SLC45A3Q96JT2 553 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 KCNK16Q96T55 309 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 SLC39A3Q9BRY0 314 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 HOXC10Q9NYD6 342 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 KLK14Q9P0G3 267 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 PHIPQ8WWQ0 1821 aa21.39■■□□□ 1.02
CTCF-202ENST00000401394 TFEBP19484 476 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 RPL5P46777 297 aaKnown RBP21.39■■□□□ 1.01
CTCF-202ENST00000401394 RBBP8Q99708 897 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 SNTG2Q9NY99 539 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 KLHL8Q9P2G9 620 aaPredicted RBP21.39■■□□□ 1.01
CTCF-202ENST00000401394 PARP14Q460N5 1801 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 IL18RAPO95256 599 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 HNRNPLP14866 589 aaKnown RBP eCLIP21.39■■□□□ 1.015e-8■□□□□ 10.7
CTCF-202ENST00000401394 NMBRP28336 390 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 ADGRE1Q14246 886 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 PIGGQ5H8A4 983 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 MYO1HQ8N1T3 1032 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 LENG1Q96BZ8 264 aaPredicted RBP21.39■■□□□ 1.01
CTCF-202ENST00000401394 SCYL1Q96KG9 808 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 WDR41Q9HAD4 459 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 TNFRSF12AQ9NP84 129 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 C20orf96Q9NUD7 363 aaPredicted RBP21.39■■□□□ 1.01
CTCF-202ENST00000401394 ADA2Q9NZK5 511 aa21.39■■□□□ 1.01
CTCF-202ENST00000401394 ZCWPW2A0A1B0GU75 182 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 KCNU1A8MYU2 1149 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 POLBP06746 335 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 FAM200BP0CF97 657 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 TKTP29401 623 aaKnown RBP21.38■■□□□ 1.01
CTCF-202ENST00000401394 BNC2Q6ZN30 1099 aaPredicted RBP21.38■■□□□ 1.01
CTCF-202ENST00000401394 MARVELD2Q8N4S9 558 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 DNERQ8NFT8 737 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms