RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 INTS11Q5TA45 600 aaKnown RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 ULK2Q8IYT8 1036 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 LACRTQ9GZZ8 138 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 SEMA4AQ9H3S1 761 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 UBA2Q9UBT2 640 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 RABGEF1Q9UJ41 708 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 TDRKHQ9Y2W6 561 aaKnown RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 PCDHA11Q9Y5I1 949 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 URADA6NGE7 173 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 ENO4A6NNW6 628 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 STX11O75558 287 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 RECQL5O94762 991 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CHKAP35790 457 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 EPS8Q12929 822 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 SLC2A14Q8TDB8 520 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 TPD52L3Q96J77 140 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 SPATA5L1Q9BVQ7 753 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 ATXN3LQ9H3M9 355 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 MID1IP1Q9NPA3 183 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 KCNK4Q9NYG8 393 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 AKAP7Q9P0M2 348 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CPA4Q9UI42 421 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 GSTK1Q9Y2Q3 226 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CYP3A7-CYP3A51PA0A087WV96 503 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 TBKBP1A7MCY6 615 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 PQBP1O60828 265 aaKnown RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 VAPBO95292 243 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 ATG7O95352 703 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 USP17L7P0C7H9 530 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 HSMCR30P0CW71 290 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 ITGB6P18564 788 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CYP3A7P24462 503 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CXCR2P25025 360 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 MIPP30301 263 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 SSTR1P30872 391 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 IL5RAQ01344 420 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 PWP1Q13610 501 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 N4BP2L1Q5TBK1 243 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 PLEKHA7Q6IQ23 1121 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 FBXL19Q6PCT2 694 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 SLC30A10Q6XR72 485 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 DHFR2Q86XF0 187 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 RORBQ92753 470 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 PROX1Q92786 737 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CENPTQ96BT3 561 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 HSFY1Q96LI6 401 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 IL25Q9H293 177 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 DDX20Q9UHI6 824 aaKnown RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 NFASCO94856 1347 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 C3P01024 1663 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 NUMA1Q14980 2115 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 RECQL4O94761 1208 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 ITGAVP06756 1048 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CCDC130P13994 396 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 TNNI3P19429 210 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 ME2P23368 584 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 WARSP23381 471 aaKnown RBP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 SMARCB1Q12824 385 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 TIMM50Q3ZCQ8 353 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 CLYBLQ8N0X4 340 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 NKX2-3Q8TAU0 364 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 VMP1Q96GC9 406 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 ZYG11BQ9C0D3 744 aa5.55□□□□□ -1.52
VPS13C-204ENST00000395898 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13C-204ENST00000395898 WDR27A2RRH5 827 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 ERN1O75460 977 aaKnown RBP5.54□□□□□ -1.52
VPS13C-204ENST00000395898 LDLRP01130 860 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 NFICP08651 508 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 PSEN2P49810 448 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 CXCL9Q07325 125 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 BOP1Q14137 746 aaKnown RBP5.54□□□□□ -1.52
VPS13C-204ENST00000395898 MEA1Q16626 185 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 C11orf88Q6PI97 169 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 RIPOR1Q6ZS17 1223 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 UBR1Q8IWV7 1749 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 MRPL17Q9NRX2 175 aaKnown RBP5.54□□□□□ -1.52
VPS13C-204ENST00000395898 OR12D3Q9UGF7 316 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 FBXO10Q9UK96 956 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 LRCH1Q9Y2L9 728 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 BAZ2AQ9UIF9 1905 aaKnown RBP5.54□□□□□ -1.52
VPS13C-204ENST00000395898 ANKDD1BA6NHY2 528 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 H3BN98 237 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 BCL10O95999 233 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 KDELR1P24390 212 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 MAPK9P45984 424 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 RPL21P46778 160 aaKnown RBP5.54□□□□□ -1.52
VPS13C-204ENST00000395898 CDH8P55286 799 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 DEFB128Q7Z7B8 93 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 OR8H2Q8N162 312 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 OR6Y1Q8NGX8 325 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 ACMSDQ8TDX5 336 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 ZNF75CPQ92670 426 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-204ENST00000395898 WNT8BQ93098 351 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 FUCA2Q9BTY2 467 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 ARHGAP28Q9P2N2 729 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 E5RJQ4 531 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 BTN3A1O00481 513 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 PDE9AO76083 593 aa5.54□□□□□ -1.52
VPS13C-204ENST00000395898 ABCB1P08183 1280 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms