RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TUBA4AP68366 448 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 SQLEQ14534 574 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 MGAT5BQ3V5L5 792 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PPP1R15BQ5SWA1 713 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ZCCHC8Q6NZY4 707 aaKnown RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 AP3S1Q92572 193 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 RCN3Q96D15 328 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PTGFRNQ9P2B2 879 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 MAPRE3Q9UPY8 281 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 OVOS2A0A0G2JMS6 1433 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ERBB3P21860 1342 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 IQCMA0A1B0GVH7 501 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 DHRS12A0PJE2 317 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 GAS2O43903 313 aaKnown RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ITGA7Q13683 1181 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 MED22Q15528 200 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 MEA1Q16626 185 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 RUNDC3AQ59EK9 446 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ANKS6Q68DC2 871 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 MILR1Q7Z6M3 343 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 COMMD2Q86X83 199 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ATP6V0D2Q8N8Y2 350 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 RPRD1AQ96P16 312 aaPredicted RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 RIT2Q99578 217 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 HGH1Q9BTY7 390 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ANKEF1Q9NU02 776 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PRKAG3Q9UGI9 489 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 SYNPO2Q9UMS6 1093 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 SSR3Q9UNL2 185 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 COQ6Q9Y2Z9 468 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 C2CD2LO14523 706 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 EPN2O95208 641 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 GARTP22102 1010 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 IL27RAQ6UWB1 636 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 SATL1Q86VE3 508 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 VPS35Q96QK1 796 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 BCL2L14Q9BZR8 327 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 TOR3AQ9H497 397 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PDGFCQ9NRA1 345 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PRR12Q9ULL5 1215 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 MSH4O15457 936 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 EFCAB12Q6NXP0 572 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PLET1Q6UQ28 207 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PEG10Q86TG7 708 aaKnown RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 BHMTQ93088 406 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 MTFMTQ96DP5 389 aaKnown RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 VCLP18206 1134 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 IST1P53990 364 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 RABL6Q3YEC7 729 aaPredicted RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ZNF470Q6ECI4 717 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 CCDC36Q8IYA8 594 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 CCDC185Q8N715 623 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 MED8Q96G25 268 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ISCA1Q9BUE6 129 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ADI1Q9BV57 179 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 VAPBO95292 243 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 LSM8O95777 96 aaKnown RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 CCDC166P0CW27 439 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 IFNGR2P38484 337 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 POLD2P49005 469 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ARL4DP49703 201 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 GMFBP60983 142 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PPATQ06203 517 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 DPYSL3Q14195 570 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 KCNV1Q6PIU1 500 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 DAGLBQ8NCG7 672 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 RP9Q8TA86 221 aaKnown RBP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 OTUD5Q96G74 571 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 A0A0B4J269 797 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 ECE2O60344 883 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 C1QBPQ07021 282 aaKnown RBP12.02□□□□□ -0.48
SYNPO-202ENST00000394243 CDH17Q12864 832 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 TBATAQ96M53 351 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 COPS4Q9BT78 406 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 NOL11Q9H8H0 719 aaKnown RBP12.02□□□□□ -0.48
SYNPO-202ENST00000394243 KCNH7Q9NS40 1196 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 NRKQ7Z2Y5 1582 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 TCF4P15884 667 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 NAGLUP54802 743 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 CISHQ9NSE2 258 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 EGFL7Q9UHF1 273 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 SLC25A13Q9UJS0 675 aa12.02□□□□□ -0.48
SYNPO-202ENST00000394243 RGS14O43566 566 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 CYP4B1P13584 511 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 HPGDP15428 266 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 ACO1P21399 889 aaKnown RBP12.02□□□□□ -0.49
SYNPO-202ENST00000394243 KPNA1P52294 538 aaPredicted RBP12.02□□□□□ -0.49
SYNPO-202ENST00000394243 BICRALQ6AI39 1079 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 MAP10Q9P2G4 905 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 PCDHGC5Q9Y5F6 944 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 FAM25EA8MYX2 175 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 RTN3O95197 1032 aaPredicted RBP12.02□□□□□ -0.49
SYNPO-202ENST00000394243 CHRNGP07510 517 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 FDX1P10109 184 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 HIRAP54198 1017 aaPredicted RBP12.02□□□□□ -0.49
SYNPO-202ENST00000394243 IQSEC1Q6DN90 963 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 ABRAQ8N0Z2 381 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 HTR3CQ8WXA8 447 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 ELMO3Q96BJ8 720 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms