RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SMYD2Q9NRG4 433 aa25.76■■□□□ 1.71
SHOX2-201ENST00000389589 SYBUQ9NX95 663 aa25.76■■□□□ 1.71
SHOX2-201ENST00000389589 IGLV3-10A0A075B6K4 115 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 KRT38O76015 456 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 NAB1Q13506 487 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 ARHGAP36Q6ZRI8 547 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 PIGWQ7Z7B1 504 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 CDKL2Q92772 493 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 TGS1Q96RS0 853 aaKnown RBP25.75■■□□□ 1.71
SHOX2-201ENST00000389589 NDFIP2Q9NV92 336 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 TMEM248Q9NWD8 314 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 AAR2Q9Y312 384 aaKnown RBP25.75■■□□□ 1.71
SHOX2-201ENST00000389589 TLR5O60602 858 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 POLBP06746 335 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 NPY2RP49146 381 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 SPANXN3Q5MJ09 141 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 NAPEPLDQ6IQ20 393 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 ZNF449Q6P9G9 518 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 LINC00523Q86TU6 105 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 CNTD1Q8N815 330 aa25.75■■□□□ 1.71
SHOX2-201ENST00000389589 OXNAD1Q96HP4 312 aaPredicted RBP25.75■■□□□ 1.71
SHOX2-201ENST00000389589 TRIM56Q9BRZ2 755 aaKnown RBP25.75■■□□□ 1.71
SHOX2-201ENST00000389589 MAGED2Q9UNF1 606 aaPredicted RBP25.75■■□□□ 1.71
SHOX2-201ENST00000389589 HBS1LQ9Y450 684 aaKnown RBP25.75■■□□□ 1.71
SHOX2-201ENST00000389589 EFCAB14O75071 495 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 RPL17P18621 184 aaKnown RBP25.74■■□□□ 1.71
SHOX2-201ENST00000389589 DNAJB2P25686 324 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 CNTFP26441 200 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 CRADDP78560 199 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 SLC18A2Q05940 514 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 CRYMQ14894 314 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 ANO4Q32M45 955 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 HHATQ5VTY9 493 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 TPGS2Q68CL5 300 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 DNAAF3Q8N9W5 541 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 TMEM169Q96HH4 297 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 FCRL5Q96RD9 977 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 PAIP2Q9BPZ3 127 aaKnown RBP25.74■■□□□ 1.71
SHOX2-201ENST00000389589 CLSTN3Q9BQT9 956 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 FAM169AQ9Y6X4 670 aa25.74■■□□□ 1.71
SHOX2-201ENST00000389589 ANXA9O76027 345 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 CSH1P0DML2 217 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 CSH2P0DML3 217 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 GJA8P48165 433 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 PAPOLAP51003 745 aaKnown RBP25.73■■□□□ 1.71
SHOX2-201ENST00000389589 SEPT7Q16181 437 aaKnown RBP25.73■■□□□ 1.71
SHOX2-201ENST00000389589 MARK2Q7KZI7 788 aaKnown RBP25.73■■□□□ 1.71
SHOX2-201ENST00000389589 SLC39A11Q8N1S5 342 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 ZNF461Q8TAF7 563 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 FATE1Q969F0 183 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 CABS1Q96KC9 395 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 C11orf49Q9H6J7 331 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 CCSER2Q9H7U1 834 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 PIH1D1Q9NWS0 290 aaKnown RBP25.73■■□□□ 1.71
SHOX2-201ENST00000389589 MAGEB16A2A368 324 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 TRIM49D1C9J1S8 452 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 DSG1Q02413 1049 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 SNX30Q5VWJ9 437 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 ANKS4BQ8N8V4 417 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 CCDC197Q8NCU1 140 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 USP33Q8TEY7 942 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 SERAC1Q96JX3 654 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 HERC2P3Q9BVR0 1158 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 GLOD4Q9HC38 313 aa25.73■■□□□ 1.71
SHOX2-201ENST00000389589 C2CD2LO14523 706 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 ABLIM3O94929 683 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 TIMP1P01033 207 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 FRG1Q14331 258 aaKnown RBP25.72■■□□□ 1.71
SHOX2-201ENST00000389589 SLC1A5Q15758 541 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 FBXO46Q6PJ61 603 aaPredicted RBP25.72■■□□□ 1.71
SHOX2-201ENST00000389589 C6orf89Q6UWU4 347 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 RGS9BPQ6ZS82 235 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 YTHDF3Q7Z739 585 aaKnown RBP25.72■■□□□ 1.71
SHOX2-201ENST00000389589 APOPT1Q96IL0 206 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 RC3H2Q9HBD1 1191 aaKnown RBP25.72■■□□□ 1.71
SHOX2-201ENST00000389589 IPO11Q9UI26 975 aaKnown RBP25.72■■□□□ 1.71
SHOX2-201ENST00000389589 DNMT3LQ9UJW3 386 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 GOLGA6L7A0A1B0GV03 622 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 DRGXA6NNA5 263 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 LAG3P18627 525 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 FBXL22Q6P050 247 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 LVRNQ6Q4G3 990 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 SH2D5Q6ZV89 423 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 SRLQ86TD4 932 aa25.72■■□□□ 1.71
SHOX2-201ENST00000389589 CMTR2Q8IYT2 770 aaKnown RBP25.72■■□□□ 1.71
SHOX2-201ENST00000389589 NOL6Q9H6R4 1146 aaKnown RBP25.72■■□□□ 1.71
SHOX2-201ENST00000389589 RRP15Q9Y3B9 282 aaKnown RBP25.72■■□□□ 1.71
SHOX2-201ENST00000389589 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.71■■□□□ 1.71
SHOX2-201ENST00000389589 GOLGA8RI6L899 631 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 LPXNO60711 386 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 USP12O75317 370 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 KIAA0754O94854 1291 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 HMBSP08397 361 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 TAC1P20366 129 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 ATP5C1P36542 298 aaKnown RBP25.71■■□□□ 1.71
SHOX2-201ENST00000389589 NIPAL4Q0D2K0 466 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 CDH17Q12864 832 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 PDK4Q16654 411 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 RAP1GAP2Q684P5 730 aa25.71■■□□□ 1.71
SHOX2-201ENST00000389589 OTOP3Q7RTS5 596 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms