RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 C12orf29Q8N999 325 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 NLGN2Q8NFZ4 835 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 FAM162AQ96A26 154 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 TBC1D10AQ9BXI6 508 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 FTHL17Q9BXU8 183 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 DIABLOQ9NR28 239 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 UTP6Q9NYH9 597 aaKnown RBP15.29■□□□□ 0.04
NPHP4-201ENST00000378156 EIF3LQ9Y262 564 aaKnown RBP15.29■□□□□ 0.04
NPHP4-201ENST00000378156 A0A096LPK6 155 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 SMIM35A0A1B0GVV1 85 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 FAM95CA0A1B0GW59 222 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 MYO1GB0I1T2 1018 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 B4GALT4O60513 344 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 CST3P01034 146 aaPredicted RBP15.29■□□□□ 0.04
NPHP4-201ENST00000378156 SLC20A2Q08357 652 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 CSTF3Q12996 717 aaKnown RBP15.29■□□□□ 0.04
NPHP4-201ENST00000378156 ZNF470Q6ECI4 717 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 B4GALNT2Q8NHY0 566 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 CASP10Q92851 521 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 ACSS3Q9H6R3 686 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 LRRC4CQ9HCJ2 640 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 FAM105AQ9NUU6 356 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 BTBD7Q9P203 1132 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 ARHGAP28Q9P2N2 729 aa15.29■□□□□ 0.04
NPHP4-201ENST00000378156 SAC3D1A6NKF1 404 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 TULP2O00295 520 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 TRDMT1O14717 391 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 CHADO15335 359 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 HIRAP54198 1017 aaPredicted RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 CACNA2D1P54289 1103 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 POLNQ7Z5Q5 900 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 ECSITQ9BQ95 431 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 NIFKQ9BYG3 293 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 ST6GALNAC4Q9H4F1 302 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 GIT1Q9Y2X7 761 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 COL1A2P08123 1366 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 SF3B1O75533 1304 aaKnown RBP eCLIP15.28■□□□□ 0.048e-6■■■■■ 107
NPHP4-201ENST00000378156 AVILO75366 819 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 MPOP05164 745 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 SLC34A1Q06495 639 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 TBL3Q12788 808 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 PTPN20Q4JDL3 420 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 PABPC1LQ4VXU2 614 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 CACHD1Q5VU97 1274 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 PLEKHA7Q6IQ23 1121 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 NXF3Q9H4D5 531 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 TCF7L2Q9NQB0 619 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 ERI2A8K979 691 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 WBP4O75554 376 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 ICAM3P32942 547 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 NME5P56597 212 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 DAW1Q8N136 415 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 C17orf80Q9BSJ5 609 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 DHX33Q9H6R0 707 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 UBA2Q9UBT2 640 aaPredicted RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 RGPD2P0DJD1 1756 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 A0A0A0MRY4 1105 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 ZNF862O60290 1169 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 DLGAP3O95886 979 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 ERVK-10P10266 1014 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 DARSP14868 501 aaKnown RBP15.28■□□□□ 0.04
NPHP4-201ENST00000378156 UBE3AQ05086 875 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 CEP78Q5JTW2 689 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 SPATA13Q96N96 652 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 CAMKK2Q96RR4 588 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 NMRK1Q9NWW6 199 aa15.28■□□□□ 0.04
NPHP4-201ENST00000378156 C4BPAP04003 597 aaKnown RBP15.27■□□□□ 0.04
NPHP4-201ENST00000378156 PTGIRP43119 386 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 ARL4DP49703 201 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 TCHHL1Q5QJ38 904 aaPredicted RBP15.27■□□□□ 0.04
NPHP4-201ENST00000378156 THUMPD3Q9BV44 507 aaKnown RBP15.27■□□□□ 0.04
NPHP4-201ENST00000378156 BBS2Q9BXC9 721 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 KLHL25Q9H0H3 589 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 RNPEPL1Q9HAU8 725 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 LRRC37A3O60309 1634 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 FGF10O15520 208 aaPredicted RBP15.27■□□□□ 0.04
NPHP4-201ENST00000378156 PEX10O60683 326 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 DDHD2O94830 711 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 MFSD5Q6N075 450 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 HOMEZQ8IX15 550 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 PIK3R5Q8WYR1 880 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 ITGB1BP2Q9UKP3 347 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 PTCH2Q9Y6C5 1203 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 MYH2Q9UKX2 1941 aa15.27■□□□□ 0.04
NPHP4-201ENST00000378156 SPTLC1O15269 473 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 DCXO43602 365 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 TRIM13O60858 407 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 MMP3P08254 477 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 C4BPBP20851 252 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.27■□□□□ 0.03
NPHP4-201ENST00000378156 MON1BQ7L1V2 547 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 SLC22A9Q8IVM8 553 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 CPNE1Q99829 537 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 SIKE1Q9BRV8 207 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 NRDE2Q9H7Z3 1164 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 BLVRAP53004 296 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 NCALDP61601 193 aa15.27■□□□□ 0.03
NPHP4-201ENST00000378156 SFSWAPQ12872 951 aaKnown RBP15.27■□□□□ 0.03
NPHP4-201ENST00000378156 PREPLQ4J6C6 727 aaPredicted RBP15.27■□□□□ 0.03
NPHP4-201ENST00000378156 TBL1YQ9BQ87 522 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms