RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 MAP1SQ66K74 1059 aaPredicted RBP13.93□□□□□ -0.18
COL4A1-201ENST00000375820 LRRC74BQ6ZQY2 392 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 CLEC17AQ6ZS10 378 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 GPSM1Q86YR5 675 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 MAGEE2Q8TD90 523 aaPredicted RBP13.93□□□□□ -0.18
COL4A1-201ENST00000375820 PCDH12Q9NPG4 1184 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 SLCO1B7G3V0H7 640 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 SERPINE1P05121 402 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 CDC73Q6P1J9 531 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 SMARCD1Q96GM5 515 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 ABCC3O15438 1527 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 CAPN15O75808 1086 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 FCGR1AP12314 374 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 CTSEP14091 401 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 LRPAP1P30533 357 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 HSPA14Q0VDF9 509 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 SPIDRQ14159 915 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 PPM1LQ5SGD2 360 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 KCNT2Q6UVM3 1135 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 MCOLN3Q8TDD5 553 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 CPNE1Q99829 537 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 EHD3Q9NZN3 535 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 ZNHIT2Q9UHR6 403 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 PRKAB1Q9Y478 270 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 PTPN3P26045 913 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 ABL2P42684 1182 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.93□□□□□ -0.18
COL4A1-201ENST00000375820 KRR1Q13601 381 aaKnown RBP13.93□□□□□ -0.18
COL4A1-201ENST00000375820 Q4G0T1 1027 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 COLGALT2Q8IYK4 626 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 BPIFB6Q8NFQ5 453 aa13.93□□□□□ -0.18
COL4A1-201ENST00000375820 TNFRSF21O75509 655 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 PIRTP0C851 137 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 HPCAL1P37235 193 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SFSWAPQ12872 951 aaKnown RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 CCDC153Q494R4 210 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 GPAT3Q53EU6 434 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 CSGALNACT1Q8TDX6 532 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 DNAJC1Q96KC8 554 aaKnown RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 XPNPEP3Q9NQH7 507 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 UBAP1Q9NZ09 502 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SPATA31A1Q5TZJ5 1347 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 BCLAF3A2AJT9 711 aaKnown RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 DDNO94850 711 aaPredicted RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 IGSF6O95976 241 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ITGA3P26006 1051 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 PSMB4P28070 264 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 S100A3P33764 101 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 CD86P42081 329 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 GSTM5P46439 218 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 RNASE12Q5GAN4 147 aaKnown RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 EARS2Q5JPH6 523 aaKnown RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 FBXL19Q6PCT2 694 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ZNF276Q8N554 614 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ARRDC4Q8NCT1 418 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 GPR152Q8TDT2 470 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 APOPT1Q96IL0 206 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 APOL4Q9BPW4 351 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 PCDH9Q9HC56 1237 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 MAT2BQ9NZL9 334 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 OPTCQ9UBM4 332 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ADM5C9JUS6 153 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 HOXA2O43364 376 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ZBTB14O43829 449 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SPANXN3Q5MJ09 141 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 RAP1GAP2Q684P5 730 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 PARGQ86W56 976 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SLC9A7Q96T83 725 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ZNF518BQ9C0D4 1074 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SLITRK2Q9H156 845 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 NMRAL1Q9HBL8 299 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 CATSPERZQ9NTU4 200 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 THG1LQ9NWX6 298 aaKnown RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ENTPD4Q9Y227 616 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 MBD5Q9P267 1494 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 PEX11AO75192 247 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 GP5P40197 560 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ADCYAP1R1P41586 468 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 IL12RB1P42701 662 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 PRAMEF19Q5SWL8 479 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 OR52K1Q8NGK4 314 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 RELTQ969Z4 430 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 OMDQ99983 421 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 TM6SF2Q9BZW4 377 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 CHST7Q9NS84 486 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SLC24A2Q9UI40 661 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 MED14O60244 1454 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SMIM22K7EJ46 135 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 RPS12P25398 132 aaKnown RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 RFX5P48382 616 aaPredicted RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 RAPSNQ13702 412 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SDHAF4Q5VUM1 108 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 TSHZ1Q6ZSZ6 1077 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 DENND6AQ8IWF6 608 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 PCSK9Q8NBP7 692 aaKnown RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 AGBL3Q8NEM8 1001 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 ZNF75CPQ92670 426 aaPredicted RBP13.92□□□□□ -0.18
COL4A1-201ENST00000375820 SPATC1LQ9H0A9 340 aa13.92□□□□□ -0.18
COL4A1-201ENST00000375820 TBC1D3BA6NDS4 549 aa13.91□□□□□ -0.18
COL4A1-201ENST00000375820 F8VP50 259 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms