RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 VTCN1Q7Z7D3 282 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 DIS3L2Q8IYB7 885 aaKnown RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF786Q8N393 782 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 FIG4Q92562 907 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 CCDC120Q96HB5 630 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 WRNIP1Q96S55 665 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 FEM1AQ9BSK4 669 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 GRIP2Q9C0E4 1043 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 QTRT2Q9H974 415 aaKnown RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 RAVER2Q9HCJ3 691 aaKnown RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 HOXC10Q9NYD6 342 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 UXTQ9UBK9 157 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 KIF24Q5T7B8 1368 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 ISPDA4D126 451 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 QSOX1O00391 747 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 PPEF1O14829 653 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 GSC2O15499 205 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 PRPF3O43395 683 aaKnown RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 RPS6KA5O75582 802 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 METTL18O95568 372 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 APRTP07741 180 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 PFKFB1P16118 471 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 PAX6P26367 422 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 CHRNA5P30532 468 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 CTSOP43234 321 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 SLC6A9P48067 706 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 NR0B1P51843 470 aaKnown RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 RHDQ02161 417 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 PHF19Q5T6S3 580 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 SYDE2Q5VT97 1194 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 IER5Q5VY09 327 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 NLRP10Q86W26 655 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 DEPDC4Q8N2C3 294 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 FAM98AQ8NCA5 519 aaKnown RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 SHCBP1LQ9BZQ2 653 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 TUBG2Q9NRH3 451 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 DPP7Q9UHL4 492 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 YARS2Q9Y2Z4 477 aaKnown RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 PCDHA2Q9Y5H9 948 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 TNRQ92752 1358 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 ABCC11Q96J66 1382 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 H3BM21 787 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 M0R036 132 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 PODXLO00592 558 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TRDMT1O14717 391 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 MBP02144 154 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SLC2A2P11168 524 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF23P17027 643 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 RHCEP18577 417 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 HOXA13P31271 388 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 VLDLRP98155 873 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 RAB32Q13637 225 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 KCNA10Q16322 511 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SNAPC1Q16533 368 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 VMACQ2NL98 169 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 KLHL26Q53HC5 615 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 FNBP1LQ5T0N5 605 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SYCE2Q6PIF2 218 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 NT5DC3Q86UY8 548 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 FOXRED2Q8IWF2 684 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SLC22A15Q8IZD6 547 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ASB12Q8WXK4 309 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 EDC3Q96F86 508 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CCSER1Q9C0I3 900 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 MARCH7Q9H992 704 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 PTPRHQ9HD43 1115 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 FKBPLQ9UIM3 349 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SCAF8Q9UPN6 1271 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CACNA1CQ13936 2221 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SPAG6O75602 509 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SERPING1P05155 500 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CTHP32929 405 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 POLR2HP52434 150 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 S100A12P80511 92 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ARL16Q0P5N6 197 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SREBF2Q12772 1141 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TTMPQ5BVD1 217 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TTC33Q6PID6 262 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ADGRG6Q86SQ4 1221 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 FAM129CQ86XR2 697 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TRAPPC5Q8IUR0 188 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ELMO1Q92556 727 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF333Q96JL9 665 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 B3GALT6Q96L58 329 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 C12orf66Q96MD2 445 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 OLFM3Q96PB7 478 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CITED2Q99967 270 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 RTKNQ9BST9 563 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 RETREG1Q9H6L5 497 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM206Q9H813 350 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ARHGEF4Q9NR80 690 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 KCNS2Q9ULS6 477 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ADAM18Q9Y3Q7 739 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 GRIN2DO15399 1336 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CCNE2O96020 404 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 AGTP01019 485 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 STAG3L1P0CL83 205 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 HOXC9P31274 260 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 HNF4AP41235 474 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 MAGEA11P43364 429 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms