RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 KLRG1Q96E93 195 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 CATSPER2Q96P56 530 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 SERPINI1Q99574 410 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 NUF2Q9BZD4 464 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 AKT3Q9Y243 479 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 KPNA7A9QM74 516 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 PDLIM1O00151 329 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 HBP1O60381 514 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 STAU1O95793 577 aaKnown RBP16.72■□□□□ 0.27
SDC4-201ENST00000372733 C2P06681 752 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 DPP6P42658 865 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 CDKL1Q00532 357 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 IFRD2Q12894 506 aaPredicted RBP16.72■□□□□ 0.27
SDC4-201ENST00000372733 PIGGQ5H8A4 983 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 GALNT4Q8N4A0 578 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.72■□□□□ 0.27
SDC4-201ENST00000372733 URGCPQ8TCY9 931 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 PKP2Q99959 881 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 NMRAL1Q9HBL8 299 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 RGSL1A5PLK6 1076 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 MATN2O00339 956 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 SH3BGRP55822 239 aaPredicted RBP16.72■□□□□ 0.27
SDC4-201ENST00000372733 USP46P62068 366 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 FAM187BQ17R55 369 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 MYLK3Q32MK0 819 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 TICAM1Q8IUC6 712 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 ZDHHC17Q8IUH5 632 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 RNF139Q8WU17 664 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 LENG1Q96BZ8 264 aaPredicted RBP16.72■□□□□ 0.27
SDC4-201ENST00000372733 PRPF18Q99633 342 aaKnown RBP16.72■□□□□ 0.27
SDC4-201ENST00000372733 SPATC1LQ9H0A9 340 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 RBM38Q9H0Z9 239 aaKnown RBP16.72■□□□□ 0.27
SDC4-201ENST00000372733 FZD10Q9ULW2 581 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 RAB26Q9ULW5 256 aa16.72■□□□□ 0.27
SDC4-201ENST00000372733 JUNP05412 331 aaKnown RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 SULT1E1P49888 294 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 B3GNT6Q6ZMB0 384 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 PID1Q7Z2X4 250 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 MFSD3Q96ES6 412 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 NFKBIZQ9BYH8 718 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 ILKAPQ9H0C8 392 aaPredicted RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 SMARCAD1Q9H4L7 1026 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 DDX18Q9NVP1 670 aaKnown RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.71■□□□□ 0.27
SDC4-201ENST00000372733 TUBGCP4Q9UGJ1 667 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 TMCO1Q9UM00 188 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 A0A1B0GTW7 788 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 GOLGA8TH3BQL2 631 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 HNRNPRO43390 633 aaKnown RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 PIGNO95427 931 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 PDGFRBP09619 1106 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 INSRRP14616 1297 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 GLUD2P49448 558 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 CYLC2Q14093 348 aaPredicted RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 SEL1L3Q68CR1 1132 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 KBTBD7Q8WVZ9 684 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 CNDP1Q96KN2 507 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 MRPS26Q9BYN8 205 aaKnown RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 LRRC40Q9H9A6 602 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 PREBQ9HCU5 417 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 KLHL8Q9P2G9 620 aaPredicted RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 HSFX1Q9UBD0 423 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 VANGL2Q9ULK5 521 aa16.71■□□□□ 0.27
SDC4-201ENST00000372733 GNEQ9Y223 722 aaKnown RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 ZNF638Q14966 1978 aaKnown RBP16.71■□□□□ 0.27
SDC4-201ENST00000372733 ZCWPW2A0A1B0GU75 182 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 HDAC3O15379 428 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 PENKP01210 267 aaPredicted RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 SAT1P21673 171 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 NXNQ6DKJ4 435 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 FAM156AQ8NDB6 213 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 ZFP28Q8NHY6 868 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 SREK1Q8WXA9 508 aaKnown RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 FAM149B1Q96BN6 582 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 KLHL32Q96NJ5 620 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 APOL2Q9BQE5 337 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 ACE2Q9BYF1 805 aaPredicted RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 WDR41Q9HAD4 459 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 OXSMQ9NWU1 459 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 CCDC78A2IDD5 438 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 GRID2O43424 1007 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 TNFAIP8O95379 198 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 TCN1P20061 433 aaPredicted RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 PPARGP37231 505 aaPredicted RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 GLRBP48167 497 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 SNX16P57768 344 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 BST2Q10589 180 aaKnown RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 PDK1Q15118 436 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 ARL13AQ5H913 290 aaPredicted RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 GLRA4Q5JXX5 417 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 OTUD1Q5VV17 481 aaPredicted RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 DEFB106AQ8N104 65 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 AHI1Q8N157 1196 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 DNAAF3Q8N9W5 541 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 ZMAT2Q96NC0 199 aaKnown RBP16.7■□□□□ 0.26
SDC4-201ENST00000372733 TASP1Q9H6P5 420 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 ZNF696Q9H7X3 374 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 SLC39A10Q9ULF5 831 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 RAP2CQ9Y3L5 183 aa16.7■□□□□ 0.26
SDC4-201ENST00000372733 CITO14578 2027 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms