RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CMPK1P30085 196 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CBX5P45973 191 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 TM4SF4P48230 202 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 NEK3P51956 506 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 MEF2AQ02078 507 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 RHDQ02161 417 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 MLF2Q15773 248 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 SNCBQ16143 134 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 PIK3R6Q5UE93 754 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ALS2CLQ60I27 953 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 HGSNATQ68CP4 663 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 REP15Q6BDI9 236 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 TMEM270Q6UE05 265 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 XKR5Q6UX68 686 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CEACAM20Q6UY09 585 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CHST9Q7L1S5 443 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SHC3Q92529 594 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 TMEM143Q96AN5 459 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 GRAMD1AQ96CP6 724 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 MTMR8Q96EF0 704 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 PRICKLE1Q96MT3 831 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 LSM14BQ9BX40 385 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 NIF3L1Q9GZT8 377 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 RAD21L1Q9H4I0 556 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SERHL2Q9H4I8 314 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 EURLQ9NYK6 297 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.17□□□□□ -1.74
USH2A-202ENST00000366942 WWOXQ9NZC7 414 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 BTBD7Q9P203 1132 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 RBM7Q9Y580 266 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 A0A1W2PQ45 241 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 A0A1W2PQY0 241 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 HNRNPRO43390 633 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 DNAJC8O75937 253 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 AGTP01019 485 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 GFAPP14136 432 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CSF2RAP15509 400 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 COL9A1P20849 921 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ENDOUP21128 410 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 RPA1P27694 616 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 EPHB2P29323 1055 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 AVPR2P30518 371 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 GRIA2P42262 883 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 LIFRP42702 1097 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SLC7A2P52569 658 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 DSC1Q08554 894 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 MZT1Q08AG7 82 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SIGLEC14Q08ET2 396 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 INTS6LQ5JSJ4 861 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 CEP85LQ5SZL2 805 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ARL6IP4Q66PJ3 421 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 FOXR2Q6PJQ5 311 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 TP53INP2Q8IXH6 220 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 PPTC7Q8NI37 304 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ZCCHC14Q8WYQ9 949 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 RMI1Q9H9A7 625 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 MRPL40Q9NQ50 206 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 PNO1Q9NRX1 252 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 RIC8BQ9NVN3 520 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CLEC1BQ9P126 229 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CNTN3Q9P232 1028 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 EPS15L1Q9UBC2 864 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 R3HDM2Q9Y2K5 976 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 CEP170BQ9Y4F5 1589 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 MASP2O00187 686 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ZSCAN9O15535 394 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 FLRT2O43155 660 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 STBD1O95210 358 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CYP1A1P04798 512 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 CDC25AP30304 524 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 RPL3P39023 403 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 HCAR3P49019 387 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CLCN2P51788 898 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CSE1LP55060 971 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 GRM4Q14833 912 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 C8orf74Q6P047 294 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SLC2A7Q6PXP3 512 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SV2AQ7L0J3 742 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 NIPA1Q7RTP0 329 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 WDR75Q8IWA0 830 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 RHOT1Q8IXI2 618 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 GPT2Q8TD30 523 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 NCLNQ969V3 563 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 JSRP1Q96MG2 331 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 SPZ1Q9BXG8 430 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 EPHX3Q9H6B9 360 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 NOL6Q9H6R4 1146 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 PCDH18Q9HCL0 1135 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ZNF232Q9UNY5 417 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 LZTS1Q9Y250 596 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CAB39Q9Y376 341 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 ZMYM6O95789 1325 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 hCG_1809904A0A1W2PP81 198 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 A0A1W2PPE2 198 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 A0A1W2PR64 198 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 A0A1W2PRV1 198 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CCDC66A2RUB6 948 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SLC35F4A4IF30 521 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 FOXO6A8MYZ6 492 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 FZD9O00144 591 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms