RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SPECC1L-ADORA2AF8WAN1 911 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 B3GAT3O94766 335 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 JCHAINP01591 159 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 IGHA2P01877 340 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 TPH1P17752 444 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 GRK2P25098 689 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 MAGEA12P43365 314 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 NAA25Q14CX7 972 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 TBCCQ15814 346 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 CST9Q5W186 159 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 PM20D1Q6GTS8 502 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 PLD6Q8N2A8 252 aaKnown RBP22.24■■□□□ 1.15
SHMT1-202ENST00000352886 TRPV1Q8NER1 839 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 IRGQQ8WZA9 623 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 TEKT5Q96M29 485 aa22.24■■□□□ 1.15
SHMT1-202ENST00000352886 SEC23IPQ9Y6Y8 1000 aaKnown RBP22.24■■□□□ 1.15
SHMT1-202ENST00000352886 TNPO2O14787 897 aaKnown RBP22.23■■□□□ 1.15
SHMT1-202ENST00000352886 POMCP01189 267 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 RALBP11234 206 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 ARRB2P32121 409 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 BRCC3P46736 316 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 ZNF135P52742 658 aaPredicted RBP22.23■■□□□ 1.15
SHMT1-202ENST00000352886 TUBB3Q13509 450 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 RCN1Q15293 331 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 DCLRE1AQ6PJP8 1040 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.23■■□□□ 1.15
SHMT1-202ENST00000352886 MAB21L3Q8N8X9 362 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 HASPINQ8TF76 798 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 SOCS4Q8WXH5 440 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 CAB39LQ9H9S4 337 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 SUFUQ9UMX1 484 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 LRRC42Q9Y546 428 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 KRT36O76013 467 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 SRGAP2BP0DMP2 458 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 CPA3P15088 417 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 SESN3P58005 492 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 ITGA9Q13797 1035 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 FRG1Q14331 258 aaKnown RBP22.23■■□□□ 1.15
SHMT1-202ENST00000352886 CCDC153Q494R4 210 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 KCNMB4Q86W47 210 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 TNS4Q8IZW8 715 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 DQX1Q8TE96 717 aaKnown RBP22.23■■□□□ 1.15
SHMT1-202ENST00000352886 NAF1Q96HR8 494 aaKnown RBP22.23■■□□□ 1.15
SHMT1-202ENST00000352886 FAM161BQ96MY7 647 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 LBHD1Q9BQE6 289 aaPredicted RBP22.23■■□□□ 1.15
SHMT1-202ENST00000352886 ACBD6Q9BR61 282 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 IL22Q9GZX6 179 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 C20orf96Q9NUD7 363 aaPredicted RBP22.23■■□□□ 1.15
SHMT1-202ENST00000352886 TMLHEQ9NVH6 421 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 PNPOQ9NVS9 261 aa22.23■■□□□ 1.15
SHMT1-202ENST00000352886 GPR182O15218 404 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 PGK1P00558 417 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 MYCNP04198 464 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-202ENST00000352886 NPY2RP49146 381 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 RWDD4Q6NW29 188 aaKnown RBP22.22■■□□□ 1.15
SHMT1-202ENST00000352886 FAM171BQ6P995 826 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 ZSCAN18Q8TBC5 510 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-202ENST00000352886 STN1Q9H668 368 aaKnown RBP22.22■■□□□ 1.15
SHMT1-202ENST00000352886 APOBEC2Q9Y235 224 aaKnown RBP22.22■■□□□ 1.15
SHMT1-202ENST00000352886 KPNA6O60684 536 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 MAGEC1O60732 1142 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 ABCE1P61221 599 aaKnown RBP22.22■■□□□ 1.15
SHMT1-202ENST00000352886 MPP3Q13368 585 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 DLG2Q15700 870 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 CCDC6Q16204 474 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 MAVSQ7Z434 540 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 METTL23Q86XA0 190 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 USP33Q8TEY7 942 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 DPF3Q92784 378 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 DMAP1Q9NPF5 467 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-202ENST00000352886 STOML1Q9UBI4 398 aa22.22■■□□□ 1.15
SHMT1-202ENST00000352886 A0A096LPK6 155 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 MAGEB16A2A368 324 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 RAP1GDS1P52306 607 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 IRF9Q00978 393 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 EP400NLQ6ZTU2 488 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 OTOP3Q7RTS5 596 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 SERINC5Q86VE9 423 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 STMN2Q93045 179 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 SIK2Q9H0K1 926 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 IARS2Q9NSE4 1012 aaKnown RBP22.21■■□□□ 1.15
SHMT1-202ENST00000352886 SOX13Q9UN79 622 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 PLA2G4CQ9UP65 541 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 SORCS3Q9UPU3 1222 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 COL4A4P53420 1690 aaPredicted RBP22.21■■□□□ 1.15
SHMT1-202ENST00000352886 GOLGA8TH3BQL2 631 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 PSMG1O95456 288 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 AOC1P19801 751 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 NMBRP28336 390 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 ZNF157P51786 506 aaPredicted RBP22.21■■□□□ 1.15
SHMT1-202ENST00000352886 PRPSAP1Q14558 356 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 RABGAP1LQ5R372 815 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 NAPEPLDQ6IQ20 393 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 MRPL10Q7Z7H8 261 aaKnown RBP22.21■■□□□ 1.15
SHMT1-202ENST00000352886 CNTD1Q8N815 330 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 SCAMP5Q8TAC9 235 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 TMEM209Q96SK2 561 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 PTPRDP23468 1912 aa22.21■■□□□ 1.15
SHMT1-202ENST00000352886 CCDC78A2IDD5 438 aa22.2■■□□□ 1.14
SHMT1-202ENST00000352886 DFFAO00273 331 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms