RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 TCEAL4Q96EI5 215 aa17.76■□□□□ 0.43
CLDN4-201ENST00000340958 PWWP2AQ96N64 755 aa17.76■□□□□ 0.43
CLDN4-201ENST00000340958 RBM15Q96T37 977 aaKnown RBP eCLIP17.76■□□□□ 0.432e-8■■■■□ 24.1
CLDN4-201ENST00000340958 SLC46A2Q9BY10 475 aa17.76■□□□□ 0.43
CLDN4-201ENST00000340958 A0A0C4DFX4 3053 aa17.76■□□□□ 0.43
CLDN4-201ENST00000340958 ZNF197O14709 1029 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 CHADO15335 359 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 PTPN3P26045 913 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 FDFT1P37268 417 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 CCR2P41597 374 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 MAPKAPK2P49137 400 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ARL4CP56559 192 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 SLC7A9P82251 487 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ZNF33AQ06730 810 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 SKIV2LQ15477 1246 aaKnown RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 HSP90B2PQ58FF3 399 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ANKRD22Q5VYY1 191 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ALS2CLQ60I27 953 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 DENND2CQ68D51 928 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 PPP1R21Q6ZMI0 780 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ARHGAP36Q6ZRI8 547 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 LRRC49Q8IUZ0 686 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ARHGAP12Q8IWW6 846 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ZNF567Q8N184 647 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 NAT8LQ8N9F0 302 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 USP33Q8TEY7 942 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 NSMCE1Q8WV22 266 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 SMG7Q92540 1137 aaKnown RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 WBP2Q969T9 261 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ZFRQ96KR1 1074 aaKnown RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 AGAP3Q96P47 875 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 VAT1Q99536 393 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 SMG9Q9H0W8 520 aaKnown RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 SAYSD1Q9NPB0 183 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 FARP1Q9Y4F1 1045 aaPredicted RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 TTLL3Q9Y4R7 772 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 VCANP13611 3396 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 RASA4BC9J798 803 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 RASA4O43374 803 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 METTL18O95568 372 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 LATS1O95835 1130 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 JCHAINP01591 159 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 EPHA5P54756 1037 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 CDH4P55283 916 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 RPS24P62847 133 aaKnown RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 NTHL1P78549 312 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 WASHC5Q12768 1159 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ZNF177Q13360 481 aaPredicted RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 HIF1AQ16665 826 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 DUSP6Q16828 381 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ITPRIPL1Q6GPH6 555 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 PDIK1LQ8N165 341 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 MYEOVQ96EZ4 313 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 HMCESQ96FZ2 354 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 TASP1Q9H6P5 420 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 SP110Q9HB58 689 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 RSPH14Q9UHP6 348 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 IPO11Q9UI26 975 aaKnown RBP17.75■□□□□ 0.43
CLDN4-201ENST00000340958 TRHDEQ9UKU6 1024 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 ZNF510Q9Y2H8 683 aa17.75■□□□□ 0.43
CLDN4-201ENST00000340958 CLDN11O75508 207 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 CCNB1P14635 433 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 IFFO1Q0D2I5 559 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 ANO4Q32M45 955 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 PARP15Q460N3 678 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 C6orf118Q5T5N4 469 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 TMC5Q6UXY8 1006 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 TRMT10CQ7L0Y3 403 aaKnown RBP17.74■□□□□ 0.43
CLDN4-201ENST00000340958 C12orf76Q8N812 135 aaPredicted RBP17.74■□□□□ 0.43
CLDN4-201ENST00000340958 EXOC4Q96A65 974 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 TSGA13Q96PP4 275 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 CDCA3Q99618 268 aaPredicted RBP17.74■□□□□ 0.43
CLDN4-201ENST00000340958 PLAAQ9Y263 795 aa17.74■□□□□ 0.43
CLDN4-201ENST00000340958 MRPS23Q9Y3D9 190 aaKnown RBP17.74■□□□□ 0.43
CLDN4-201ENST00000340958 MTCL1Q9Y4B5 1905 aaKnown RBP17.74■□□□□ 0.43
CLDN4-201ENST00000340958 TCRBV7S3A2A0A539 114 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 LEFTY2O00292 366 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 MAFKO60675 156 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 SARNPP82979 210 aaKnown RBP17.73■□□□□ 0.43
CLDN4-201ENST00000340958 PDIA2Q13087 525 aaKnown RBP17.73■□□□□ 0.43
CLDN4-201ENST00000340958 PRPSAP1Q14558 356 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 PARP6Q2NL67 630 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 TEX44Q53QW1 395 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 ARTNQ5T4W7 220 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 TTC39BQ5VTQ0 682 aaPredicted RBP17.73■□□□□ 0.43
CLDN4-201ENST00000340958 AFMIDQ63HM1 303 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 CMTM8Q8IZV2 173 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 TMA16Q96EY4 203 aaKnown RBP17.73■□□□□ 0.43
CLDN4-201ENST00000340958 PABPC3Q9H361 631 aaKnown RBP17.73■□□□□ 0.43
CLDN4-201ENST00000340958 SEMA4AQ9H3S1 761 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 RETREG1Q9H6L5 497 aa17.73■□□□□ 0.43
CLDN4-201ENST00000340958 NRG2O14511 850 aaPredicted RBP17.72■□□□□ 0.43
CLDN4-201ENST00000340958 MATN3O15232 486 aa17.72■□□□□ 0.43
CLDN4-201ENST00000340958 TBL1XO60907 577 aa17.72■□□□□ 0.43
CLDN4-201ENST00000340958 RHOCP08134 193 aa17.72■□□□□ 0.43
CLDN4-201ENST00000340958 PSMB4P28070 264 aa17.72■□□□□ 0.43
CLDN4-201ENST00000340958 ZXDBP98169 803 aa17.72■□□□□ 0.43
CLDN4-201ENST00000340958 HYAL1Q12794 435 aa17.72■□□□□ 0.43
CLDN4-201ENST00000340958 ZBTB17Q13105 803 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms