RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 RNF39Q9H2S5 420 aa14.7□□□□□ -0.06
CPSF7-201ENST00000340437 TUT1Q9H6E5 874 aaKnown RBP14.7□□□□□ -0.06
CPSF7-201ENST00000340437 ETAA1Q9NY74 926 aa14.7□□□□□ -0.06
CPSF7-201ENST00000340437 NUP205Q92621 2012 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 ERCC2P18074 760 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 PIK3R1P27986 724 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 TKTP29401 623 aaKnown RBP14.69□□□□□ -0.06
CPSF7-201ENST00000340437 GRIA4P48058 902 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 THOP1P52888 689 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 POU6F1Q14863 301 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 ARMCX2Q7L311 632 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 KCNMB4Q86W47 210 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 BHLHE22Q8NFJ8 381 aaPredicted RBP14.69□□□□□ -0.06
CPSF7-201ENST00000340437 KCNK16Q96T55 309 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 PIN4Q9Y237 131 aaKnown RBP14.69□□□□□ -0.06
CPSF7-201ENST00000340437 PHIPQ8WWQ0 1821 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 C15orf38-AP3S2A0A0A6YYH1 394 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.69□□□□□ -0.06
CPSF7-201ENST00000340437 SPTLC1O15269 473 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 PRKCGP05129 697 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 PLK1P53350 603 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 BCAT1P54687 386 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 TPI1P60174 286 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 SEPT6Q14141 434 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 LSM12Q3MHD2 195 aaKnown RBP14.69□□□□□ -0.06
CPSF7-201ENST00000340437 ARL13AQ5H913 290 aaPredicted RBP14.69□□□□□ -0.06
CPSF7-201ENST00000340437 MTHFD1LQ6UB35 978 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 ARPINQ7Z6K5 226 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 ACTRT2Q8TDY3 377 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 IFT43Q96FT9 208 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 PHF12Q96QT6 1004 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 NDNQ99608 321 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 PRPF18Q99633 342 aaKnown RBP14.69□□□□□ -0.06
CPSF7-201ENST00000340437 GORASP1Q9BQQ3 440 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 C1orf21Q9H246 121 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 OCEL1Q9H607 264 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 KPNA7A9QM74 516 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 JUNP05412 331 aaKnown RBP14.69□□□□□ -0.06
CPSF7-201ENST00000340437 TSPAN8P19075 237 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 SERPINB8P50452 374 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 GRM3Q14832 879 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 ZNF280DQ6N043 979 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 OTOP3Q7RTS5 596 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 SLC41A1Q8IVJ1 513 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 ANKRD52Q8NB46 1076 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 APPL2Q8NEU8 664 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 NLGN2Q8NFZ4 835 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 DCUN1D1Q96GG9 259 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 CAMKK2Q96RR4 588 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 LRRC40Q9H9A6 602 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 VCX3AQ9NNX9 186 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 RBPJLQ9UBG7 517 aa14.69□□□□□ -0.06
CPSF7-201ENST00000340437 DPYSL4O14531 572 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 NCAM1P13591 858 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 HNRNPLP14866 589 aaKnown RBP eCLIP14.68□□□□□ -0.06
CPSF7-201ENST00000340437 NFKB1P19838 968 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 NMBRP28336 390 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 FBXO47Q5MNV8 452 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 FAM91A1Q658Y4 838 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 ACAD11Q709F0 780 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 DSELQ8IZU8 1212 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 CPNE1Q99829 537 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 SUDS3Q9H7L9 328 aaPredicted RBP14.68□□□□□ -0.06
CPSF7-201ENST00000340437 DFFAO00273 331 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 HUS1O60921 280 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 NME5P56597 212 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 CYLC2Q14093 348 aaPredicted RBP14.68□□□□□ -0.06
CPSF7-201ENST00000340437 SEL1L3Q68CR1 1132 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 AAGABQ6PD74 315 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 TIFABQ6ZNK6 161 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 RBM44Q6ZP01 1051 aaKnown RBP14.68□□□□□ -0.06
CPSF7-201ENST00000340437 SLC26A9Q7LBE3 791 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 DPP9Q86TI2 863 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 RAB3IL1Q8TBN0 382 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 VPS39Q96JC1 886 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 ACE2Q9BYF1 805 aaPredicted RBP14.68□□□□□ -0.06
CPSF7-201ENST00000340437 PIGVQ9NUD9 493 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 FZD10Q9ULW2 581 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 MCM3APO60318 1980 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 MATKP42679 507 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 ITGA7Q13683 1181 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 TLR1Q15399 786 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 ANKRD20A4Q4UJ75 823 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 GRTP1Q5TC63 336 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 OLFML2BQ68BL8 750 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 CYP2R1Q6VVX0 501 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 KYQ8NBH2 561 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 IPMKQ8NFU5 416 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 SPATA22Q8NHS9 363 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 ACMSDQ8TDX5 336 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 APBB2Q92870 758 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 RBBP8Q99708 897 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 DDIT4Q9NX09 232 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 DNAJC28Q9NX36 388 aa14.68□□□□□ -0.06
CPSF7-201ENST00000340437 NEMP2A6NFY4 417 aa14.67□□□□□ -0.06
CPSF7-201ENST00000340437 CCNT2O60583 730 aaKnown RBP14.67□□□□□ -0.06
CPSF7-201ENST00000340437 HDCP19113 662 aa14.67□□□□□ -0.06
CPSF7-201ENST00000340437 TKTL1P51854 596 aa14.67□□□□□ -0.06
CPSF7-201ENST00000340437 CHN2P52757 468 aa14.67□□□□□ -0.06
CPSF7-201ENST00000340437 GRIK4Q16099 956 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms