RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 UXTQ9UBK9 157 aaPredicted RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 SSX2IPQ9Y2D8 614 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 F5H5T6 163 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 MATN3O15232 486 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 AP2A1O95782 977 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 CREB1P16220 341 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 STX2P32856 288 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 NDST2P52849 883 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 CRADDP78560 199 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 KBTBD12Q3ZCT8 623 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 CASC4Q6P4E1 433 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 TMC7Q7Z402 723 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 LGI2Q8N0V4 545 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 CNTD1Q8N815 330 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 MAML1Q92585 1016 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 MYEOVQ96EZ4 313 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 HMCESQ96FZ2 354 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 TRIM56Q9BRZ2 755 aaKnown RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 FETUBQ9UGM5 382 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 IPO11Q9UI26 975 aaKnown RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 SLC4A7Q9Y6M7 1214 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 LAMA2P24043 3122 aaKnown RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 LCHNA4D1U4 455 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 DRGXA6NNA5 263 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 RASA4BC9J798 803 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 RASA4O43374 803 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 TGM5O43548 720 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 TLL1O43897 1013 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 ACSL4O60488 711 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 USP12O75317 370 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 CXCL14O95715 111 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 IRF1P10914 325 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 KRT15P19012 456 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 MGAT1P26572 445 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 MSH2P43246 934 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 RFWD3Q6PCD5 774 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 LEKR1Q6ZMV7 388 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 UNC5AQ6ZN44 842 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 ZNF354CQ86Y25 554 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 DENND1CQ8IV53 801 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 PLD4Q96BZ4 506 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 STAMBPL1Q96FJ0 436 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 ZNF419Q96HQ0 510 aaPredicted RBP13.68□□□□□ -0.22
HMGB1-202ENST00000339872 MLPHQ9BV36 600 aaPredicted RBP13.68□□□□□ -0.22
HMGB1-202ENST00000339872 PLAC1Q9HBJ0 212 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 ZNF334Q9HCZ1 680 aaPredicted RBP13.68□□□□□ -0.22
HMGB1-202ENST00000339872 UBP1Q9NZI7 540 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 MAFFQ9ULX9 164 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 ERI2A8K979 691 aaKnown RBP13.68□□□□□ -0.22
HMGB1-202ENST00000339872 NEBLO76041 1014 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 OAS1P00973 400 aaKnown RBP13.68□□□□□ -0.22
HMGB1-202ENST00000339872 CHN1P15882 459 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 SLC6A4P31645 630 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 LSP1P33241 339 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 PPP3CCP48454 512 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 SLC11A2P49281 568 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 PRPSAP1Q14558 356 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 OTOP3Q7RTS5 596 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 PRPF39Q86UA1 669 aaKnown RBP13.68□□□□□ -0.22
HMGB1-202ENST00000339872 ITIH5Q86UX2 942 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 LRRC49Q8IUZ0 686 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 OR52K1Q8NGK4 314 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 RAD9AQ99638 391 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 IL12RB2Q99665 862 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 RNF38Q9H0F5 515 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 TRPC7Q9HCX4 862 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 GKN1Q9NS71 199 aa13.68□□□□□ -0.22
HMGB1-202ENST00000339872 SDR42E2A6NKP2 422 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 STC2O76061 302 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 SUN1O94901 812 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 BRAFP15056 766 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 CORO1AP31146 461 aaKnown RBP13.67□□□□□ -0.22
HMGB1-202ENST00000339872 CTNNB1P35222 781 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 NR1H3Q13133 447 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 RASA2Q15283 850 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 ANO4Q32M45 955 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 FAM133BQ5BKY9 247 aaKnown RBP13.67□□□□□ -0.22
HMGB1-202ENST00000339872 KCTD11Q693B1 232 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 TMEM150AQ86TG1 271 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 CFAP52Q8N1V2 620 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 OXNAD1Q96HP4 312 aaPredicted RBP13.67□□□□□ -0.22
HMGB1-202ENST00000339872 TCF25Q9BQ70 676 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 DHRS4Q9BTZ2 278 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 ALG13Q9NP73 1137 aaKnown RBP13.67□□□□□ -0.22
HMGB1-202ENST00000339872 KCNK9Q9NPC2 374 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 ENTPD7Q9NQZ7 604 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 RBM22Q9NW64 420 aaKnown RBP eCLIP13.67□□□□□ -0.22
HMGB1-202ENST00000339872 SYBUQ9NX95 663 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 ZNF212Q9UDV6 495 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 PCDHA11Q9Y5I1 949 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 IKBKGQ9Y6K9 419 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 TMEM120BA0PK00 339 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 ERICH4A6NGS2 130 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 RAMP2O60895 175 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 HLA-DQB2P05538 268 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 ADH1AP07327 375 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 GSTA2P09210 222 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 OR1E1P30953 314 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 ADGRD1Q6QNK2 874 aa13.67□□□□□ -0.22
HMGB1-202ENST00000339872 TRABD2AQ86V40 505 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms