RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 USP17L10C9JJH3 530 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 UBAP1LF5GYI3 381 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DYRK3O43781 588 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 KPNA6O60684 536 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 TOM1O60784 492 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ERBB2P04626 1255 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 SNRPAP09012 282 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ATF4P18848 351 aaPredicted RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DCKP27707 260 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 OR3A3P47888 321 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 HCAR3P49019 387 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 NR2C2P49116 596 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 VAMP7P51809 220 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 SLC18A2Q05940 514 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ZNF846Q147U1 533 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 NFIXQ14938 502 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 LRRC41Q15345 812 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 MDH1BQ5I0G3 518 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 STYK1Q6J9G0 422 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 CDC42EP5Q6NZY7 148 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 POTEGQ6S5H5 508 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ZBTB46Q86UZ6 589 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 CHERPQ8IWX8 916 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 AFAP1L2Q8N4X5 818 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 XXYLT1Q8NBI6 393 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 SIMC1Q8NDZ2 872 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 HIPK4Q8NE63 616 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 GRIN3AQ8TCU5 1115 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 INTS12Q96CB8 462 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 RMND5BQ96G75 393 aaPredicted RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 TOE1Q96GM8 510 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ZNF347Q96SE7 839 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 TMEM79Q9BSE2 394 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 C1QTNF7Q9BXJ2 289 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 THAP2Q9H0W7 228 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ADNPQ9H2P0 1102 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 PDZD7Q9H5P4 517 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 TBC1D22BQ9NU19 505 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 GGA3Q9NZ52 723 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ASIC3Q9UHC3 531 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 PCDHGC3Q9UN70 934 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 CNTNAP1P78357 1384 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DNALI1O14645 258 aaPredicted RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DHX15O43143 795 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 FAM13AO94988 1023 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 P4HBP07237 508 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DLDP09622 509 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ACTN1P12814 892 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DNAJB1P25685 340 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 GSTM2P28161 218 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 GCAP28676 217 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 SERPINB1P30740 379 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 IDUAP35475 653 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ETV1P50549 477 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 MYL6P60660 151 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ARID5AQ03989 594 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 MRPL28Q13084 256 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DNASE1L3Q13609 305 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 MTMR2Q13614 643 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 SQLEQ14534 574 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 KCNT1Q5JUK3 1230 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 MFSD14BQ5SR56 506 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 UGT3A1Q6NUS8 523 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 FAM171BQ6P995 826 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 LYPD8Q6UX82 237 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DPP8Q6V1X1 898 aaPredicted RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 CENPUQ71F23 418 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ALYREFQ86V81 257 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 GRPEL2Q8TAA5 225 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 LHFPL5Q8TAF8 219 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ZNF564Q8TBZ8 553 aaPredicted RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ACDQ96AP0 544 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 TSNARE1Q96NA8 513 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 MXRA8Q9BRK3 442 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 WDR18Q9BV38 432 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 TSSK1BQ9BXA7 367 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 TEKT3Q9BXF9 490 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 SLC4A5Q9BY07 1137 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 PCDH9Q9HC56 1237 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DDX4Q9NQI0 724 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 MRPL39Q9NYK5 338 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 NINJ2Q9NZG7 142 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 TFCP2L1Q9NZI6 479 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ARHGAP28Q9P2N2 729 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 ACAD8Q9UKU7 415 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 RNF11Q9Y3C5 154 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 UGT2A1Q9Y4X1 527 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 DCAF8L1A6NGE4 600 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 C2orf71A6NGG8 1288 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 POLRMTO00411 1230 aaKnown RBP6.78□□□□□ -1.32
ZNF540-201ENST00000316433 BET1O15155 118 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 EXTL3O43909 919 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 GAS7O60861 476 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 NDUFS2O75306 463 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 FGF18O76093 207 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 GH2P01242 217 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 MYL2P10916 166 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 NPR1P16066 1061 aa6.78□□□□□ -1.32
ZNF540-201ENST00000316433 COMTP21964 271 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms