RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 NPR2P20594 1047 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 GDI2P50395 445 aaKnown RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 TPTEP56180 551 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 RUNDC3AQ59EK9 446 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 CXorf57Q6NSI4 855 aaKnown RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 SAE1Q9UBE0 346 aaPredicted RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 RAB21Q9UL25 225 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 CHD2O14647 1828 aaKnown RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 AFF2P51816 1311 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 PURAQ00577 322 aaKnown RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 CCDC36Q8IYA8 594 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 ACTL9Q8TC94 416 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 OSBPL11Q9BXB4 747 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 PIDD1Q9HB75 910 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 PDGFCQ9NRA1 345 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 SLC24A2Q9UI40 661 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 METTL21EPA6NDL7 271 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 MPOP05164 745 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 CAPGP40121 348 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 CRATP43155 626 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 MAGEA12P43365 314 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 EIF2S3LQ2VIR3 472 aaKnown RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 IFNLR1Q8IU57 520 aaPredicted RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 ATP10BO94823 1461 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 TEX28O15482 410 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 PPM1BO75688 479 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 IFNA14P01570 189 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 TCF4P15884 667 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 RAB25P57735 213 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 TUBA1BP68363 451 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 CCDC157Q569K6 752 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 TUBA1AQ71U36 451 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 R3HCC1LQ7Z5L2 792 aaKnown RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 SLC6A15Q9H2J7 730 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 ADAMTS12P58397 1594 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 MGAT1P26572 445 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 RPA1P27694 616 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 PRKAA1Q13131 559 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 EMC2Q15006 297 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 RAB43Q86YS6 212 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 SMYD1Q8NB12 490 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 GMCL1Q96IK5 515 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 VPS9D1Q9Y2B5 631 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 ASB14A6NK59 587 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 ALOX5P09917 674 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 S100A2P29034 98 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 MAZP56270 477 aaKnown RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 SCARF1Q14162 830 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 VTI1BQ9UEU0 232 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 A0A075B6Q4 140 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 MTSS1O43312 755 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 LRATO95237 230 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 SERPINA1P01009 418 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 UQCRBP14927 111 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 SP100P23497 879 aaPredicted RBP8.87□□□□□ -0.99
USF3-201ENST00000316407 RRM1P23921 792 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 CHPFQ8IZ52 775 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 SLC4A11Q8NBS3 891 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 TRPV1Q8NER1 839 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 DCLK3Q9C098 648 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 C2orf40Q9H1Z8 148 aa8.87□□□□□ -0.99
USF3-201ENST00000316407 EEF1AKMT1Q8WVE0 214 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 NIF3L1Q9GZT8 377 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 ADPRHL2Q9NX46 363 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 STK32BQ9NY57 414 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 SNX7Q9UNH6 387 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 CNTFP26441 200 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 POLD2P49005 469 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 NEK3P51956 506 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 TOP3AQ13472 1001 aaPredicted RBP8.86□□□□□ -0.99
USF3-201ENST00000316407 FAM160B2Q86V87 743 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 CPNE1Q99829 537 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 ZMYM2Q9UBW7 1377 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 CCDC88AQ3V6T2 1871 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 FFAR3O14843 346 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 GPR42O15529 346 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 UMPSP11172 480 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 CDH18Q13634 790 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 TCEA2Q15560 299 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 S100PBPQ96BU1 408 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 ADI1Q9BV57 179 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 ARHGAP20Q9P2F6 1191 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 H3BM21 787 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 FGRP09769 529 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 ALADP13716 330 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 VBP1P61758 197 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 DNASE1L3Q13609 305 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 FBXO39Q8N4B4 442 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 ZNF655Q8N720 491 aaPredicted RBP8.86□□□□□ -0.99
USF3-201ENST00000316407 PPP1R2P1Q96PQ5 205 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 GPATCH1Q9BRR8 931 aaKnown RBP8.86□□□□□ -0.99
USF3-201ENST00000316407 IRF2BPLQ9H1B7 796 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 TRIT1Q9H3H1 467 aaKnown RBP8.86□□□□□ -0.99
USF3-201ENST00000316407 ECDO95905 644 aaPredicted RBP8.86□□□□□ -0.99
USF3-201ENST00000316407 TPBGLP0DKB5 382 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 PPATQ06203 517 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 PPP1R15BQ5SWA1 713 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 PALB2Q86YC2 1186 aa8.86□□□□□ -0.99
USF3-201ENST00000316407 ZBTB8BQ8NAP8 495 aaPredicted RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms