RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 OR4Q2P0C623 313 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 CCNCP24863 283 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 TYK2P29597 1187 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 SPRP35270 261 aaPredicted RBP24.46■■□□□ 1.51
TRIM54-201ENST00000296098 CAP1Q01518 475 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 INSCQ1MX18 579 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 SLC39A12Q504Y0 691 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 MANEALQ5VSG8 457 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 MBLAC2Q68D91 279 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 ZCCHC23Q6ZST2 131 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 STRA8Q7Z7C7 330 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 SCD5Q86SK9 330 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 ARHGAP12Q8IWW6 846 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 ISL2Q96A47 359 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 PTCD3Q96EY7 689 aaKnown RBP24.46■■□□□ 1.51
TRIM54-201ENST00000296098 WWP1Q9H0M0 922 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 CATSPERBQ9H7T0 1116 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 ZNF395Q9H8N7 513 aaPredicted RBP24.46■■□□□ 1.51
TRIM54-201ENST00000296098 ARL8BQ9NVJ2 186 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 THAP1Q9NVV9 213 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 SFMBT1Q9UHJ3 866 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 SERPINB8P50452 374 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 LIMK2P53671 638 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 CDH17Q12864 832 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 E2F5Q15329 346 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 RNF180Q86T96 592 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 LINC00523Q86TU6 105 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 LONP2Q86WA8 852 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 USP33Q8TEY7 942 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 PRR11Q96HE9 360 aaPredicted RBP24.45■■□□□ 1.51
TRIM54-201ENST00000296098 SNX15Q9NRS6 342 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 UBP1Q9NZI7 540 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 SOX13Q9UN79 622 aa24.45■■□□□ 1.51
TRIM54-201ENST00000296098 FCHO1O14526 889 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 CKBP12277 381 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 MAGEA12P43365 314 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 PGFP49763 221 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 ACLYP53396 1101 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 RPL10AP62906 217 aaKnown RBP24.45■■□□□ 1.5
TRIM54-201ENST00000296098 PPP2R5DQ14738 602 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 KRT72Q14CN4 511 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 PREPLQ4J6C6 727 aaPredicted RBP24.45■■□□□ 1.5
TRIM54-201ENST00000296098 FAM91A1Q658Y4 838 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 ARHGAP36Q6ZRI8 547 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 ZNF280BQ86YH2 543 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 SCN4BQ8IWT1 228 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 KLHDC8BQ8IXV7 354 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 DCLK2Q8N568 766 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 LZTR1Q8N653 840 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 CNTD1Q8N815 330 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 DDX51Q8N8A6 666 aaKnown RBP eCLIP24.45■■□□□ 1.5
TRIM54-201ENST00000296098 MFSD3Q96ES6 412 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 TLE6Q9H808 572 aa24.45■■□□□ 1.5
TRIM54-201ENST00000296098 ABI2Q9NYB9 513 aaPredicted RBP24.45■■□□□ 1.5
TRIM54-201ENST00000296098 MAGED2Q9UNF1 606 aaPredicted RBP24.45■■□□□ 1.5
TRIM54-201ENST00000296098 CENPFP49454 3210 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 DDHD2O94830 711 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 EOMESO95936 686 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 PROCP04070 461 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 EZRP15311 586 aaKnown RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 CCND1P24385 295 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 DSC1Q08554 894 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 CLLU1OSQ5K130 101 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 WLSQ5T9L3 541 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 TEDDM1Q5T9Z0 273 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 PAXIP1Q6ZW49 1069 aaPredicted RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 OTOP3Q7RTS5 596 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 ALYREFQ86V81 257 aaKnown RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 KCNMB4Q86W47 210 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 URGCPQ8TCY9 931 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 NSL1Q96IY1 281 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 FCRL2Q96LA5 508 aaPredicted RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 C20orf27Q9GZN8 174 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 ZCWPW1Q9H0M4 648 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 MARCOQ9UEW3 520 aaPredicted RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 CACNG3O60359 315 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 FGF3P11487 239 aaPredicted RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 DNAJB2P25686 324 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 GTF2A1P52655 376 aaPredicted RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 PCLAFQ15004 111 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 PPM1JQ5JR12 505 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 SLC24A5Q71RS6 500 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 TTC7BQ86TV6 843 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 RTN4RL1Q86UN2 441 aaPredicted RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 AGAP2Q99490 1192 aa24.44■■□□□ 1.5
TRIM54-201ENST00000296098 AAR2Q9Y312 384 aaKnown RBP24.44■■□□□ 1.5
TRIM54-201ENST00000296098 A0A1W2PQH9 124 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 TMEM189-UBE2V1I3L0A0 370 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 CCDC22O60826 627 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 KITP10721 976 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 TPH1P17752 444 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 HSP90AA5PQ58FG0 334 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 NOMO2Q5JPE7 1267 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 CMC1Q7Z7K0 106 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 DCP1BQ8IZD4 617 aaKnown RBP24.43■■□□□ 1.5
TRIM54-201ENST00000296098 ATXN7L3BQ96GX2 97 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 SERPINB11Q96P15 392 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 NMUR2Q9GZQ4 415 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 NMUR1Q9HB89 426 aa24.43■■□□□ 1.5
TRIM54-201ENST00000296098 CHRAC1Q9NRG0 131 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms