RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 TMEM169Q96HH4 297 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 CEP44Q9C0F1 390 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 RABGEF1Q9UJ41 708 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 STARD13Q9Y3M8 1113 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 ACTL7BQ9Y614 415 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 PNMA8CA0A1B0GUJ8 204 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 SMIM31A0A1B0GVY4 71 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 C1QBPQ07021 282 aaKnown RBP12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 SV2CQ496J9 727 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 TMEM240Q5SV17 173 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 ARMC4Q5T2S8 1044 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 ERMARDQ5T6L9 678 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 NT5DC3Q86UY8 548 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 CBWD2Q8IUF1 395 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 SNX31Q8N9S9 440 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 OR6Y1Q8NGX8 325 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 TRMT6Q9UJA5 497 aaKnown RBP12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 TELO2Q9Y4R8 837 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 IGKV6-21A0A0C4DH24 114 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 PHGDHO43175 533 aaKnown RBP12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 NCF4Q15080 339 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 GSTA3Q16772 222 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 CCDC153Q494R4 210 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 FUT11Q495W5 492 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 ATP6AP1LQ52LC2 224 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 DENND5BQ6ZUT9 1274 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 C1orf186Q6ZWK4 172 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 STRA8Q7Z7C7 330 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 ZNF398Q8TD17 642 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 GANQ9H2C0 597 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 STK39Q9UEW8 545 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 DRG1Q9Y295 367 aaKnown RBP12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 UMODL1Q5DID0 1318 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 VDRP11473 427 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 LAG3P18627 525 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 GRIK1P39086 918 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 TRIP4Q15650 581 aaPredicted RBP12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 CLEC16AQ2KHT3 1053 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 HEATR4Q86WZ0 1026 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 COLEC11Q9BWP8 271 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 NFKBIZQ9BYH8 718 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 KCNK4Q9NYG8 393 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 CROTQ9UKG9 612 aa12.06□□□□□ -0.48
SYNGAP1-201ENST00000293748 F8W810 466 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 OGTO15294 1046 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 TRIM13O60858 407 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 LDLRP01130 860 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 ATP6V1B2P21281 511 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 PRIM2P49643 509 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 SKIV2LQ15477 1246 aaKnown RBP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 PAN2Q504Q3 1202 aaKnown RBP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 SGO1Q5FBB7 561 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 ELMOD1Q8N336 334 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 TIFAQ96CG3 184 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 DCUN1D5Q9BTE7 237 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 HMG20AQ9NP66 347 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 PCDHA3Q9Y5H8 950 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 PCDHA11Q9Y5I1 949 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 COMMD3-BMI1R4GMX3 469 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 NR5A2O00482 541 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 CHRNA1P02708 482 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 MAPK1P28482 360 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 CTNNB1P35222 781 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 PNPLA4P41247 253 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 ILF2Q12905 390 aaKnown RBP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 SHHQ15465 462 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 MARCH8Q5T0T0 291 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 RSBN1Q5VWQ0 802 aaPredicted RBP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 RNF43Q68DV7 783 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 ARHGAP17Q68EM7 881 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 TTC27Q6P3X3 843 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 ZPBP2Q6X784 338 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 FAM228AQ86W67 206 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 DHFR2Q86XF0 187 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 SLC22A9Q8IVM8 553 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 HERC6Q8IVU3 1022 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 NSMCE2Q96MF7 247 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 SRPK1Q96SB4 655 aaKnown RBP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 FAM105AQ9NUU6 356 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 PMPCBO75439 489 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 CXCL10P02778 98 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 MPOP05164 745 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 GP5P40197 560 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 SLC1A6P48664 564 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 BMPR2Q13873 1038 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 FAM98BQ52LJ0 330 aaKnown RBP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 MPZL3Q6UWV2 235 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 SLC20A1Q8WUM9 679 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 WDR60Q8WVS4 1066 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 C19orf60Q96EN9 201 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 VCPIP1Q96JH7 1222 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 ZNF558Q96NG5 402 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 C9orf16Q9BUW7 83 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 ELAC1Q9H777 363 aaKnown RBP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 ERVK-5Q9HDB9 667 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 COMMD8Q9NX08 183 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 TMCC3Q9ULS5 477 aa12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 CORO1CQ9ULV4 474 aaPredicted RBP12.05□□□□□ -0.48
SYNGAP1-201ENST00000293748 F9P00740 461 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms