RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 A0A0B4J203 849 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 GOLGA8SH3BPF8 625 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 FOXN3O00409 490 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 COPEO14579 308 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SCO1O75880 301 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ETS1P14921 441 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 NCF2P19878 526 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 GLRA2P23416 452 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 RBL1P28749 1068 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 QARSP47897 775 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CASP4P49662 377 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PKNOX1P55347 436 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ECM1Q16610 540 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 KIZQ2M2Z5 673 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 FAM47AQ5JRC9 791 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 TRAPPC3LQ5T215 181 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SDE2Q6IQ49 451 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 LLGL2Q6P1M3 1020 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 FIP1L1Q6UN15 594 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MFSD4AQ8N468 514 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ANKRD53Q8N9V6 530 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 TMEM35BQ8NCS4 154 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 OR10Z1Q8NGY1 313 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ZSCAN18Q8TBC5 510 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CERKQ8TCT0 537 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 S100ZQ8WXG8 99 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SH3KBP1Q96B97 665 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 HDAC11Q96DB2 347 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SLC10A4Q96EP9 437 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 FAM84BQ96KN1 310 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SLC13A1Q9BZW2 595 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 TIGARQ9NQ88 270 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SH3GLB2Q9NR46 395 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CHST12Q9NRB3 414 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 FARSBQ9NSD9 589 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MAT2BQ9NZL9 334 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PKD2L2Q9NZM6 624 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MTRRQ9UBK8 725 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ZNF221Q9UK13 617 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PRPF19Q9UMS4 504 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PLLPQ9Y342 182 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 NFASCO94856 1347 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 AIM2O14862 343 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 DCXO43602 365 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MARCH6O60337 910 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ONECUT3O60422 494 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PEX14O75381 377 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 FDX1P10109 184 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CKMT2P17540 419 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CYP7A1P22680 504 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ACOT2P49753 483 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 RHAGQ02094 409 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 KLF1Q13351 362 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CEACAM7Q14002 265 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MTX3Q5HYI7 312 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PDPK2PQ6A1A2 396 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SLC9A4Q6AI14 798 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CIAPIN1Q6FI81 312 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MAMDC4Q6UXC1 1216 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PPP4R3CPQ6ZMV5 832 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 FAM196AQ6ZSG2 479 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 POLNQ7Z5Q5 900 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 GALNT12Q8IXK2 581 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PARP8Q8N3A8 854 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 OR6F1Q8NGZ6 308 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PIWIL2Q8TC59 973 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SNX19Q92543 992 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 HEXIM2Q96MH2 286 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 TBCBQ99426 244 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MCMBPQ9BTE3 642 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 IER2Q9BTL4 223 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ZNF277Q9NRM2 450 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 DDX28Q9NUL7 540 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PCSK1NQ9UHG2 260 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 IQANK1A0A1B0GTG1 560 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 GTPBP10A4D1E9 387 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 POTEMA6NI47 508 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 BCAS2O75934 225 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 RALAP11233 206 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PCNAP12004 261 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MYF6P23409 242 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ATICP31939 592 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 HTR2BP41595 481 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 AQP6Q13520 282 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 Q5BKY6 102 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 ATAD3CQ5T2N8 411 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 DCUN1D2Q6PH85 259 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 NSMFQ6X4W1 530 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 MAVSQ7Z434 540 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 PTAR1Q7Z6K3 402 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 GPBP1Q86WP2 473 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CMASQ8NFW8 434 aaPredicted RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 CEP95Q96GE4 821 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 REXO5Q96IC2 774 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 IDI2Q9BXS1 227 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SMOXQ9NWM0 555 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 COQ3Q9NZJ6 369 aa9.39□□□□□ -0.91
PDGFC-201ENST00000274071 IPO11Q9UI26 975 aaKnown RBP9.39□□□□□ -0.91
PDGFC-201ENST00000274071 SLCO3A1Q9UIG8 710 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms