RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 APOL2Q9BQE5 337 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ZDHHC2Q9UIJ5 367 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 GJD2Q9UKL4 321 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 RGSL1A5PLK6 1076 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 TMEM233B4DJY2 109 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 H3BSA7 217 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 TRIM13O60858 407 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 RNASEH2AO75792 299 aaKnown RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 POLBP06746 335 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 SAT1P21673 171 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ACAT1P24752 427 aaKnown RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 SLC5A2P31639 672 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 RGS2P41220 211 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 PTPN9P43378 593 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 RBP5P82980 135 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 CCDC153Q494R4 210 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ARL13AQ5H913 290 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 CELF3Q5SZQ8 465 aaKnown RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 GJC2Q5T442 439 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 CERCAMQ5T4B2 595 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 AMIGO2Q86SJ2 522 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 FBXO16Q8IX29 292 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 SPATA6LQ8N4H0 392 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 CHST13Q8NET6 341 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 DTNBP1Q96EV8 351 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 KIF12Q96FN5 646 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 LRGUKQ96M69 825 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ZNF512Q96ME7 567 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 CPNE1Q99829 537 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 FERMT1Q9BQL6 677 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ASB7Q9H672 318 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 SUDS3Q9H7L9 328 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 NMRAL1Q9HBL8 299 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 PTTG2Q9NZH5 202 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 GTF2IRD1Q9UHL9 959 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ZNF487B1APH4 448 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 C19orf81C9J6K1 198 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 TRPA1O75762 1119 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 C22orf31O95567 290 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 PENKP01210 267 aaPredicted RBP12.65□□□□□ -0.38
NUP88-201ENST00000225696 THRAP10827 490 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 MCF2P10911 925 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 ZFXP17010 805 aaPredicted RBP12.65□□□□□ -0.38
NUP88-201ENST00000225696 TPH1P17752 444 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 LMO2P25791 158 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 GMPSP49915 693 aaPredicted RBP12.65□□□□□ -0.38
NUP88-201ENST00000225696 SCNN1BP51168 640 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 LIMK2P53671 638 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 MAP7Q14244 749 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 MYBPC3Q14896 1274 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 ZNF618Q5T7W0 954 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 GRTP1Q5TC63 336 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 OTUD1Q5VV17 481 aaPredicted RBP12.65□□□□□ -0.38
NUP88-201ENST00000225696 B3GNT6Q6ZMB0 384 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 BNC2Q6ZN30 1099 aaPredicted RBP12.65□□□□□ -0.38
NUP88-201ENST00000225696 URGCPQ8TCY9 931 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 ISL2Q96A47 359 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 NPAS2Q99743 824 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 SEMA6AQ9H2E6 1030 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 PDGFCQ9NRA1 345 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 CHRAC1Q9NRG0 131 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 OXSMQ9NWU1 459 aa12.65□□□□□ -0.38
NUP88-201ENST00000225696 C7orf72A4D263 438 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 PHGDHO43175 533 aaKnown RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 GAS2O43903 313 aaKnown RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 PIGNO95427 931 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 TGFB3P10600 412 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 CDK4P11802 303 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 TFEBP19484 476 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 GRIA4P48058 902 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 SERPINB8P50452 374 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 NAGLUP54802 743 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 RPL26P61254 145 aaKnown RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 CYLC2Q14093 348 aaPredicted RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 PPP2R5DQ14738 602 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 NRF1Q16656 503 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 GLRA4Q5JXX5 417 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 LBX2Q6XYB7 198 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 PID1Q7Z2X4 250 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.64□□□□□ -0.39
NUP88-201ENST00000225696 TMEM102Q8N9M5 508 aaPredicted RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 OR6B3Q8NGW1 331 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 C18orf25Q96B23 403 aaPredicted RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 TMIGD2Q96BF3 282 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 FAM96AQ9H5X1 160 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 ZNF385DQ9H6B1 395 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 LIN28AQ9H9Z2 209 aaKnown RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 PRDM16Q9HAZ2 1276 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 PRMT7Q9NVM4 692 aaPredicted RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 TUBGCP4Q9UGJ1 667 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 KIAA1257Q9ULG3 409 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 MCM3APO60318 1980 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 PRSS51A0A1B0GVH4 220 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 FAM72CH0Y354 149 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 PDLIM1O00151 329 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 ACOT8O14734 319 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 AVPR1AP37288 418 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 RABGGTBP53611 331 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 APOFQ13790 326 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 ZNF460Q14592 562 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms