RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Arap2Q8BZ05 1703 aa12.1□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Vmn2r104E9Q2J5 860 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Cyp2j12G3UXT0 502 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Vmn2r4K7N784 913 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Cldn5O54942 218 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Aldh3a1P47739 453 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Morf4l1P60762 362 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Cul4aQ3TCH7 759 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Cdkl4Q3TZA2 342 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Brms1lQ3U1T3 323 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Syn2Q64332 586 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Pcid2Q8BFV2 399 aaKnown RBP12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Trip10Q8CJ53 603 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Wnt9aQ8R5M2 365 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 NlnQ91YP2 704 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Rasgef1cQ9D300 466 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Spatc1lQ9D9W0 342 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Akr1a1Q9JII6 325 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Ptk2bQ9QVP9 1009 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Msl3Q9WVG9 525 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Olfr1022L7MTT3 315 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Gm5152L7N200 190 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Chil3O35744 398 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Trim43cP86449 446 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Tfap2bQ61313 459 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Olfr26Q7TRB7 308 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 AA792892Q8C6S1 278 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Parp9Q8CAS9 866 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Sugp1Q8CH02 643 aaKnown RBP12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Nsl1Q8K305 281 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Impg1Q8R1W8 798 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Ppp2r2dQ925E7 453 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Olfr933Q9EQA0 308 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Ank1Q02357 1862 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Ptpn3A2ALK8 913 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Cxcr3O88410 367 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Tap2P36371 702 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Gabrr2P56476 465 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Cdh6P97326 790 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 HadhQ61425 314 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 PnocQ64387 187 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Strip2Q8C9H6 844 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Ttc39cQ8VE09 580 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Pcdhb18Q91Y02 792 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 RpainQ9CWY9 219 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Fam162aQ9D6U8 155 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Ak1Q9R0Y5 194 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Smarcb1Q9Z0H3 385 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Nipsnap3aB1AWZ3 247 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 RerglB2RVE2 204 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 ArvcfP98203 962 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Mkrn3Q60764 544 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 EfsQ64355 560 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Smad3Q8BUN5 425 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 DarsQ922B2 501 aaKnown RBP12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Mrfap1Q9CQL7 125 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Anks3Q9CZK6 655 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Trmt10bQ9D075 318 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Gm5415E9PXF3 478 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 SarsP26638 512 aaKnown RBP12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 PrkcdP28867 674 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 PuraP42669 321 aaKnown RBP12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 St14P56677 855 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 PhexP70669 749 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Tnfaip2Q61333 691 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 VclQ64727 1066 aaKnown RBP12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Pnpla8Q8K1N1 776 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Oit3Q8R4V5 546 aa12.09□□□□□ -0.47
Pcif1-201ENSMUST00000041643 Cacna2d1O08532 1103 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 ItgalP24063 1163 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Krt2Q3TTY5 707 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Wdr18Q4VBE8 431 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Trpv1Q704Y3 839 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Tspan18Q80WR1 248 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Fam78aQ8C552 283 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Olfr784Q8VFZ9 319 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Nmnat1Q9EPA7 285 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Il21rQ9JHX3 529 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Tada2bD3Z4Z0 420 aaKnown RBP12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 HmbsP22907 361 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Sel1l3Q80TS8 1137 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Syn3Q8JZP2 579 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Copg2Q9QXK3 871 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Map3k14Q9WUL6 942 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Pate3B3GLJ3 98 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Ddx43D3Z6P9 646 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Gm17535J3KMR8 224 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Atp5bP56480 529 aaKnown RBP12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Casp7P97864 303 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Serpina3mQ03734 418 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Rad51Q08297 339 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Ugt3a1Q3UP75 523 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Cpne3Q8BT60 533 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Arhgef33Q8BW86 850 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Ces2aQ8QZR3 558 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Eif3lQ8QZY1 564 aaKnown RBP12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Prrg2Q8R182 198 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 MydgfQ9CPT4 166 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Dcp2Q9CYC6 422 aa12.08□□□□□ -0.48
Pcif1-201ENSMUST00000041643 Ccdc77Q9CZH8 489 aa12.08□□□□□ -0.48
Retrieved 100 of 22,080 RNA–protein pairs in 26.3 ms