RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 SNX11Q9Y5W9 270 aa10.61□□□□□ -0.71
SCN1A-222ENST00000642141 AKAP13Q12802 2813 aa10.61□□□□□ -0.71
SCN1A-222ENST00000642141 TPRP12270 2363 aaKnown RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 ASCC3Q8N3C0 2202 aaKnown RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 EDDM13A0A1B0GTR0 161 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 GOLGA8CPA6NN73 597 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 F8VZ95 297 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 EPHB6O15197 1021 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 SRGAP2O75044 1071 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 DAB1O75553 588 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 IL1BP01584 269 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 SRPRAP08240 638 aaKnown RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 EEF1GP26641 437 aaKnown RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 MATKP42679 507 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 AFF3P51826 1226 aaKnown RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 GALCP54803 685 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 SNX16P57768 344 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 POLR2FP61218 127 aaKnown RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 SHC2P98077 582 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 IL9RQ01113 521 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 KIF19Q2TAC6 998 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 TTC31Q49AM3 519 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 RAB6CQ53S08 254 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 PRAMEF14Q5SWL7 426 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 CXorf57Q6NSI4 855 aaKnown RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 NCEH1Q6PIU2 408 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 LRSAM1Q6UWE0 723 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 SLC26A9Q7LBE3 791 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 XYLT1Q86Y38 959 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 NAXDQ8IW45 347 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 CHCHD4Q8N4Q1 142 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 AADATQ8N5Z0 425 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 C1orf216Q8TAB5 229 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 SLC30A5Q8TAD4 765 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 PTPRN2Q92932 1015 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 PCMTD1Q96MG8 357 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 NPY6RQ99463 290 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 FEM1AQ9BSK4 669 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 STK33Q9BYT3 514 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 RAB6CQ9H0N0 254 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 MUC3BQ9H195 1237 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 WDCPQ9H6R7 721 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 ASNSD1Q9NWL6 643 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 KLK13Q9UKR3 277 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 PCDHB9Q9Y5E1 797 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 SPEGQ15772 3267 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 CKAP5Q14008 2032 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 NUMA1Q14980 2115 aa10.6□□□□□ -0.71
SCN1A-222ENST00000642141 MUC22E2RYF6 1773 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-222ENST00000642141 PCDH15Q96QU1 1955 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 EPG5Q9HCE0 2579 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 A0A1B0GVM2 712 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 TCAF2A6NFQ2 919 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 K7ERQ8 282 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 GJB3O75712 270 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 GJB6O95452 261 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 MT-CO1P00395 513 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 IGHV4-34P06331 123 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 FLT3P36888 993 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 NNMTP40261 264 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 CXCR3P49682 368 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 ZBTB16Q05516 673 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 DEUP1Q05D60 604 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 TRIP6Q15654 476 aaKnown RBP10.59□□□□□ -0.71
SCN1A-222ENST00000642141 ALFQ53S48 1182 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 KIAA0895LQ68EN5 471 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 TRNP1Q6NT89 227 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 LINGO4Q6UY18 593 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 SND1Q7KZF4 910 aaKnown RBP eCLIP10.59□□□□□ -0.71
SCN1A-222ENST00000642141 TFAP2DQ7Z6R9 452 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 ADAT2Q7Z6V5 191 aaKnown RBP10.59□□□□□ -0.71
SCN1A-222ENST00000642141 EMC1Q8N766 993 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 OR14C36Q8NHC7 312 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 ENOX1Q8TC92 643 aaKnown RBP10.59□□□□□ -0.71
SCN1A-222ENST00000642141 EPS8L1Q8TE68 723 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 CFAP57Q96MR6 1250 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 SLC6A18Q96N87 628 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 ZDHHC5Q9C0B5 715 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 GANQ9H2C0 597 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 FBRSQ9HAH7 460 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 EBF2Q9HAK2 575 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 SGK2Q9HBY8 427 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 TM7SF3Q9NS93 570 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 MPP6Q9NZW5 540 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 VPS28Q9UK41 221 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 SARDHQ9UL12 918 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 WASF3Q9UPY6 502 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 ANKRD6Q9Y2G4 727 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 CEP295Q9C0D2 2601 aa10.59□□□□□ -0.71
SCN1A-222ENST00000642141 TBC1D3DA0A087WVF3 549 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3IA0A087WXS9 549 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3EA0A087X179 549 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3KA0A087X1G2 549 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TARSL2A2RTX5 802 aaKnown RBP10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3FA6NER0 549 aaPredicted RBP10.58□□□□□ -0.72
SCN1A-222ENST00000642141 UPK3BL1B0FP48 263 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3LB9A6J9 549 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 UPK3BL2E5RIL1 263 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 WNT9AO14904 365 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms