RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ANKS1BQ7Z6G8 1248 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PRUNE1Q86TP1 453 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NIPA2Q8N8Q9 360 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MIGA1Q8NAN2 632 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CSGALNACT1Q8TDX6 532 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NSMCE2Q96MF7 247 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 STRBPQ96SI9 672 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PDCD10Q9BUL8 212 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 B3GNT4Q9C0J1 378 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 USP44Q9H0E7 712 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ANKZF1Q9H8Y5 726 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 STOML2Q9UJZ1 356 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 STRAPQ9Y3F4 350 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 POM121BA6NF01 834 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NDUFS2O75306 463 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CTSSP25774 331 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 LUMP51884 338 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MFAP3P55082 362 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 C21orf59P57076 290 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SCGB2A2Q13296 93 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ME3Q16798 604 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 FOXRED2Q8IWF2 684 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CPA6Q8N4T0 437 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM145Q8NBT3 493 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TPPP3Q9BW30 176 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CLMPQ9H6B4 373 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ANKFY1Q9P2R3 1169 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 KCND3Q9UK17 655 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHGA7Q9Y5G6 932 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 FREM1Q5H8C1 2179 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ADGRA2Q96PE1 1338 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 C2orf92A0A1B0GVN3 265 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 EVPLLA8MZ36 301 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 B8ZZF3 427 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NOBOXO60393 691 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ERCC1P07992 297 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 IDO1P14902 403 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PPP3CBP16298 524 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TATP17735 454 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NR4A1P22736 598 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 RAB4BP61018 213 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PTK6Q13882 451 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SEC23AQ15436 765 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SV2BQ7L1I2 683 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 LRRC46Q96FV0 321 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 OTUB1Q96FW1 271 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 COX4I2Q96KJ9 171 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TSGA13Q96PP4 275 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MIPEPQ99797 713 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NOX1Q9Y5S8 564 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ABCB7O75027 752 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF18P17022 549 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CEBPBP17676 345 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SYT1P21579 422 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PCGF2P35227 344 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 RAP1GAPP47736 663 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SERPINB9P50453 376 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 KCNJ2P63252 427 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 DMWDQ09019 674 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 DBPQ10586 325 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 DRP2Q13474 957 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 AMHR2Q16671 573 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MTX3Q5HYI7 312 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 KRT79Q5XKE5 535 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MCEMP1Q8IX19 187 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 EFCAB3Q8N7B9 438 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ZFAND2BQ8WV99 257 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SARGQ9BW04 601 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM117Q9H0C3 514 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SRRDQ9UH36 339 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PADI4Q9UM07 663 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 FAM208BQ5VWN6 2430 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 A0A1B0GW15 77 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 A6NL46 340 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 FSCN2O14926 492 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 IPO13O94829 963 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 EOMESO95936 686 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 LSP1P33241 339 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MAGEA2P43356 314 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ITGA8P53708 1063 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM28Q13263 835 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 EPC2Q52LR7 807 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 HGH1Q9BTY7 390 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 DERAQ9Y315 318 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NUP214P35658 2090 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PSMD3O43242 534 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 BNIP3LO60238 219 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM13O60858 407 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 STAU1O95793 577 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CKMP06732 381 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ELFN1P0C7U0 828 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CYP4B1P13584 511 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GPC1P35052 558 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SLC1A3P43003 542 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TRA2BP62995 288 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 USP10Q14694 798 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TSNQ15631 228 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SV2CQ496J9 727 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SPOCD1Q6ZMY3 1216 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 AACSQ86V21 672 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms