RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TK2O00142 265 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 TM9SF1O15321 606 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 CLPXO76031 633 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 TMEM253P0C7T8 217 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 MCF2P10911 925 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 CDH1P12830 882 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 NAMPTP43490 491 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 ATN1P54259 1190 aaPredicted RBP10.45□□□□□ -0.74
VPS39-214ENST00000614932 ARHGAP8P85298 464 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 OTUD4Q01804 1114 aaKnown RBP10.45□□□□□ -0.74
VPS39-214ENST00000614932 ARHGEF16Q5VV41 709 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 GPR107Q5VW38 600 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 PPP4R3CPQ6ZMV5 832 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 FRMD5Q7Z6J6 570 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 ZBTB46Q86UZ6 589 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 PDPRQ8NCN5 879 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 OMA1Q96E52 524 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 ASIC4Q96FT7 647 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 PWWP2AQ96N64 755 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 OLAHQ9NV23 265 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 CENPFP49454 3210 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 ARHGEF37A1IGU5 675 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 CLDN25C9JDP6 229 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 TRIM77I1YAP6 450 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 SNPHO15079 494 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 SLC16A4O15374 487 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 DHX15O43143 795 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 NOL3O60936 208 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 ZNF182P17025 639 aaPredicted RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 SLC9A3P48764 834 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 GALK2Q01415 458 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 NFATC3Q12968 1075 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 DSC3Q14574 896 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 FAM102BQ5T8I3 360 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 ZCCHC8Q6NZY4 707 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 RNF207Q6ZRF8 634 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 ZNF354CQ86Y25 554 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 PAF1Q8N7H5 531 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 TRPM4Q8TD43 1214 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 ZC3H15Q8WU90 426 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 CLSTN3Q9BQT9 956 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 CBWD1Q9BRT8 395 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 ATP13A2Q9NQ11 1180 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 AGPAT3Q9NRZ7 376 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 RIMS3Q9UJD0 308 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 ZNF541Q9H0D2 1346 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 PCP4L1A6NKN8 68 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 MTSS1O43312 755 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 GCATO75600 419 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 ATP5BP06576 529 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 PLS3P13797 630 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 IVDP26440 423 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 PSMC2P35998 433 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 MARSP56192 900 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 SMARCB1Q12824 385 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 PGM5Q15124 567 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 MAPRE1Q15691 268 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 FAM47CQ5HY64 1035 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 TCHHL1Q5QJ38 904 aaPredicted RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 CYP4F22Q6NT55 531 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 SIX6OS1Q8N1H7 587 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 ANKRD53Q8N9V6 530 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 NLGN2Q8NFZ4 835 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 TCP10LQ8TDR4 215 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 MKRN2Q9H000 416 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 LRRC19Q9H756 370 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 MAGEE1Q9HCI5 957 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 AGO4Q9HCK5 861 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 ALG13Q9NP73 1137 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 SIX2Q9NPC8 291 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 TCF7L2Q9NQB0 619 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 TMEM9Q9P0T7 183 aa10.44□□□□□ -0.74
VPS39-214ENST00000614932 SUCOQ9UBS9 1254 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 CNOT11Q9UKZ1 510 aaKnown RBP10.44□□□□□ -0.74
VPS39-214ENST00000614932 A0A0B4J203 849 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 TCRBV7S2A1N4TA0A589 114 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 DYRK3O43781 588 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 SPOPO43791 374 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 SPAG6O75602 509 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 BCL10O95999 233 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 CCNE2O96020 404 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ERBB2P04626 1255 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 AOC1P19801 751 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 YWHABP31946 246 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 IDUAP35475 653 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 APLP1P51693 650 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 ALDH18A1P54886 795 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 MCCD1P59942 119 aaPredicted RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 DNASE1L3Q13609 305 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 POU6F1Q14863 301 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 IGSF11Q5DX21 431 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 XKR9Q5GH70 373 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 PXDC1Q5TGL8 231 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 FKBP1CQ5VVH2 108 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 UGT3A1Q6NUS8 523 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 DPY19L2P1Q6NXN4 242 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 FIP1L1Q6UN15 594 aaKnown RBP10.43□□□□□ -0.74
VPS39-214ENST00000614932 CARM1Q86X55 608 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 HPS6Q86YV9 775 aa10.43□□□□□ -0.74
VPS39-214ENST00000614932 FBXW8Q8N3Y1 598 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms