RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TSEN2Q8NCE0 465 aaKnown RBP14.64□□□□□ -0.07
USP39-220ENST00000613444 TSGA13Q96PP4 275 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 PAK5Q9P286 719 aa14.64□□□□□ -0.07
USP39-220ENST00000613444 NUP210Q8TEM1 1887 aaPredicted RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 A0A0A0MRY4 1105 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 MAFKO60675 156 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 DDX6P26196 483 aaKnown RBP eCLIP14.63□□□□□ -0.075e-6■■■■■ 34.8
USP39-220ENST00000613444 CHKAP35790 457 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 HSPA9P38646 679 aaKnown RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 NDST2P52849 883 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 MORF4L2Q15014 288 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 GPR158Q5T848 1215 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 ANKRD22Q5VYY1 191 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 C12orf76Q8N812 135 aaPredicted RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 PRCCQ92733 491 aaPredicted RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 SPATA13Q96N96 652 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 ARHGAP26Q9UNA1 814 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 ZFP37Q9Y6Q3 630 aaPredicted RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 MYOFQ9NZM1 2061 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 TCRBV7S3A2A0A539 114 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 SOBPA7XYQ1 873 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 KCNK1O00180 336 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 RNF103O00237 685 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 TRDMT1O14717 391 aaKnown RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 SCAMP3O14828 347 aaKnown RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 PPFIA2O75334 1257 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 METTL18O95568 372 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 PTPN3P26045 913 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 RPS24P62847 133 aaKnown RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 ANKRD20A2Q5SQ80 823 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 ANKRD20A1Q5TYW2 823 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 ANKRD20A3Q5VUR7 823 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 HTR3DQ70Z44 454 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 HDXQ7Z353 690 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 CMTM8Q8IZV2 173 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 TAB3Q8N5C8 712 aaPredicted RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 RIN3Q8TB24 985 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 PWWP2AQ96N64 755 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 CDCA3Q99618 268 aaPredicted RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 SMG9Q9H0W8 520 aaKnown RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 TASP1Q9H6P5 420 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 CCL26Q9Y258 94 aa14.63□□□□□ -0.07
USP39-220ENST00000613444 PRRC2BQ5JSZ5 2229 aaKnown RBP14.63□□□□□ -0.07
USP39-220ENST00000613444 DFFAO00273 331 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 ATP8B1O43520 1251 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 GLP2RO95838 553 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 MAGEA6P43360 314 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 TNNT3P45378 269 aaPredicted RBP14.62□□□□□ -0.07
USP39-220ENST00000613444 MAPKAPK2P49137 400 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 PAPOLAP51003 745 aaKnown RBP14.62□□□□□ -0.07
USP39-220ENST00000613444 KCNJ11Q14654 390 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 CCDC13Q8IYE1 715 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 ZNF567Q8N184 647 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 ZNF419Q96HQ0 510 aaPredicted RBP14.62□□□□□ -0.07
USP39-220ENST00000613444 CEP41Q9BYV8 373 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 RETREG1Q9H6L5 497 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 CFAP97Q9P2B7 532 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 MTRF1LQ9UGC7 380 aaKnown RBP14.62□□□□□ -0.07
USP39-220ENST00000613444 SHOC2Q9UQ13 582 aa14.62□□□□□ -0.07
USP39-220ENST00000613444 LEFTY2O00292 366 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 TMEM63AO94886 807 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 CCNCP24863 283 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 GAD2Q05329 585 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 DHX9Q08211 1270 aaKnown RBP14.61□□□□□ -0.07
USP39-220ENST00000613444 ZBTB17Q13105 803 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 UAP1Q16222 522 aaPredicted RBP14.61□□□□□ -0.07
USP39-220ENST00000613444 ELMSAN1Q6PJG2 1045 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 C4orf22Q6V702 233 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 PCGF5Q86SE9 256 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 HOOK3Q86VS8 718 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 PPIL6Q8IXY8 311 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 ZCCHC9Q8N567 271 aaKnown RBP14.61□□□□□ -0.07
USP39-220ENST00000613444 OR52K2Q8NGK3 314 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 HMCESQ96FZ2 354 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 ZSWIM3Q96MP5 696 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 ETNK1Q9HBU6 452 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 RAB6BQ9NRW1 208 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 DONSONQ9NYP3 566 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 OPHN1O60890 802 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 ZNF189O75820 626 aaPredicted RBP14.61□□□□□ -0.07
USP39-220ENST00000613444 PEX11BO96011 259 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 CEBPBP17676 345 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 OR1E1P30953 314 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 ACTN2P35609 894 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 RGS19P49795 217 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 CDH4P55283 916 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 RABGAP1LQ5R372 815 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 FAXCQ5TGI0 409 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 TMC5Q6UXY8 1006 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 TMEM184AQ6ZMB5 413 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 LRRC49Q8IUZ0 686 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 ATPAF2Q8N5M1 289 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 SMG7Q92540 1137 aaKnown RBP14.61□□□□□ -0.07
USP39-220ENST00000613444 USP13Q92995 863 aaPredicted RBP14.61□□□□□ -0.07
USP39-220ENST00000613444 DDX50Q9BQ39 737 aaKnown RBP14.61□□□□□ -0.07
USP39-220ENST00000613444 EPB41L4BQ9H329 900 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 SFXN1Q9H9B4 322 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 HPCAL4Q9UM19 191 aa14.61□□□□□ -0.07
USP39-220ENST00000613444 XIRP2A4UGR9 3374 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms