RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PGK1P00558 417 aa20.83■□□□□ 0.92
UPF1-207ENST00000599848 MAGEA10P43363 369 aaPredicted RBP20.83■□□□□ 0.92
UPF1-207ENST00000599848 UBE3AQ05086 875 aa20.83■□□□□ 0.92
UPF1-207ENST00000599848 ADRM1Q16186 407 aa20.83■□□□□ 0.92
UPF1-207ENST00000599848 LAYNQ6UX15 382 aa20.83■□□□□ 0.92
UPF1-207ENST00000599848 TERB1Q8NA31 727 aa20.83■□□□□ 0.92
UPF1-207ENST00000599848 PPP1R3GB7ZBB8 358 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 F8VZ95 297 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 NUDT2P50583 147 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 CDK16Q00536 496 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 CNTN2Q02246 1040 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 CASP12Q6UXS9 341 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 VN1R5Q7Z5H4 357 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 CYP4X1Q8N118 509 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 MYCBPAPQ8TBZ2 947 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 LRRC39Q96DD0 335 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 GEMIN8Q9NWZ8 242 aaKnown RBP20.82■□□□□ 0.92
UPF1-207ENST00000599848 SNX6Q9UNH7 406 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 DIP2BQ9P265 1576 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 OR10H2O60403 315 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 IL1BP01584 269 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 APOBEC3HQ6NTF7 200 aaKnown RBP20.82■□□□□ 0.92
UPF1-207ENST00000599848 TTLL2Q9BWV7 592 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 CATSPERZQ9NTU4 200 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 MST1RQ04912 1400 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 MOXD2PA6NHM9 499 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 LRRC72A6NJI9 287 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 UMPSP11172 480 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 VAV1P15498 845 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 POLMQ9NP87 494 aaPredicted RBP20.82■□□□□ 0.92
UPF1-207ENST00000599848 ARL15Q9NXU5 204 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 TMEM216Q9P0N5 145 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 ERVW-1Q9UQF0 538 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.82■□□□□ 0.92
UPF1-207ENST00000599848 GRM6O15303 877 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 CCR4P51679 360 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 SRSF11Q05519 484 aaKnown RBP20.82■□□□□ 0.92
UPF1-207ENST00000599848 TRIP10Q15642 601 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 RAB30Q15771 203 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 KCNT1Q5JUK3 1230 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 GJC2Q5T442 439 aaPredicted RBP20.82■□□□□ 0.92
UPF1-207ENST00000599848 OTOP1Q7RTM1 612 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 KCNMB4Q86W47 210 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 CELF6Q96J87 481 aaKnown RBP20.82■□□□□ 0.92
UPF1-207ENST00000599848 PCDHGC5Q9Y5F6 944 aa20.82■□□□□ 0.92
UPF1-207ENST00000599848 SMIM35A0A1B0GVV1 85 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 TTPAP49638 278 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 ST13P50502 369 aaKnown RBP20.81■□□□□ 0.92
UPF1-207ENST00000599848 CDK7P50613 346 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 PWP1Q13610 501 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 CAPRIN2Q6IMN6 1127 aaKnown RBP20.81■□□□□ 0.92
UPF1-207ENST00000599848 AFTPHQ6ULP2 937 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 CCNI2Q6ZMN8 369 aaPredicted RBP20.81■□□□□ 0.92
UPF1-207ENST00000599848 C16orf59Q7L2K0 433 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 TTC7BQ86TV6 843 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 FAM20CQ8IXL6 584 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 ELMO1Q92556 727 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 COQ6Q9Y2Z9 468 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 MADDQ8WXG6 1647 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 BCL9O00512 1426 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 H3BM21 787 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 O00370 1275 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 UBDO15205 165 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 SERPINB3P29508 390 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 AIF1P55008 147 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 ITGA7Q13683 1181 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 RPAINQ86UA6 219 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 LONP2Q86WA8 852 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 KLHL23Q8NBE8 558 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 FAM45AQ8TCE6 357 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 ACTRT2Q8TDY3 377 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 PABPC3Q9H361 631 aaKnown RBP20.81■□□□□ 0.92
UPF1-207ENST00000599848 MYO3AQ8NEV4 1616 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 CLEC17AQ6ZS10 378 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 MCOLN2Q8IZK6 566 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 TOP6BLQ8N6T0 577 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 CENPTQ96BT3 561 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 CORO2BQ9UQ03 480 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 OR10H1Q9Y4A9 318 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 CEP152O94986 1710 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 CHURC1-FNTBB4DL54 471 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 MAFO75444 373 aaPredicted RBP20.81■□□□□ 0.92
UPF1-207ENST00000599848 STX11O75558 287 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 ZNF682O95780 498 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 ECDO95905 644 aaPredicted RBP20.81■□□□□ 0.92
UPF1-207ENST00000599848 PRLRP16471 622 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 BNC2Q6ZN30 1099 aaPredicted RBP20.81■□□□□ 0.92
UPF1-207ENST00000599848 SH3BP5LQ7L8J4 393 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 MS4A14Q96JA4 679 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 BTBD7Q9P203 1132 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 GGT7Q9UJ14 662 aa20.81■□□□□ 0.92
UPF1-207ENST00000599848 GNSP15586 552 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 LRRC52Q8N7C0 313 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 C11orf84Q9BUA3 381 aaPredicted RBP20.8■□□□□ 0.92
UPF1-207ENST00000599848 LZTS1Q9Y250 596 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 PLOD1Q02809 727 aaPredicted RBP20.8■□□□□ 0.92
UPF1-207ENST00000599848 POU6F1Q14863 301 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 SEC23AQ15436 765 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 GJB7Q6PEY0 223 aa20.8■□□□□ 0.92
UPF1-207ENST00000599848 C11orf74Q86VG3 221 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms