RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 IRAK1P51617 712 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 PLK1P53350 603 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 CDH4P55283 916 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 SFSWAPQ12872 951 aaKnown RBP15.72■□□□□ 0.11
TRIM28-203ENST00000593582 C5orf22Q49AR2 442 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 FILIP1LQ4L180 1135 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 C9orf64Q5T6V5 341 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 EMC1Q8N766 993 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 DNASE2BQ8WZ79 361 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 C1orf74Q96LT6 269 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 C11orf70Q9BRQ4 267 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 FEM1AQ9BSK4 669 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 BTBD1Q9H0C5 482 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 PCED1AQ9H1Q7 454 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 CAPN10Q9HC96 672 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 ANLNQ9NQW6 1124 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 SEPT11Q9NVA2 429 aaKnown RBP15.72■□□□□ 0.11
TRIM28-203ENST00000593582 ADAM22Q9P0K1 906 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 SLCO3A1Q9UIG8 710 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 SCML1Q9UN30 329 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 ITIH6Q6UXX5 1313 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 METTL12A8MUP2 240 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 SYPP08247 313 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 FERP16591 822 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 MAOBP27338 520 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 NUMBP49757 651 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 STK19P49842 368 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-203ENST00000593582 ATP11AP98196 1134 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 CLEC16AQ2KHT3 1053 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 UAP1L1Q3KQV9 507 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 DCAF12L1Q5VU92 463 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 TRNP1Q6NT89 227 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 BNIPLQ7Z465 357 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 PHLDB2Q86SQ0 1253 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 FAM131BQ86XD5 332 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 GANCQ8TET4 914 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 HAPLN3Q96S86 360 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 PCDHB18PQ96TA0 734 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 GTPBP2Q9BX10 602 aaKnown RBP15.71■□□□□ 0.11
TRIM28-203ENST00000593582 MUC3BQ9H195 1237 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 MIR1-1HGQ9H1L0 117 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 RTN4Q9NQC3 1192 aaKnown RBP15.71■□□□□ 0.11
TRIM28-203ENST00000593582 SLC25A13Q9UJS0 675 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 VPS28Q9UK41 221 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 NCKAP1Q9Y2A7 1128 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 TBC1D30Q9Y2I9 924 aa15.71■□□□□ 0.11
TRIM28-203ENST00000593582 TNRC6BQ9UPQ9 1833 aaKnown RBP15.71■□□□□ 0.1
TRIM28-203ENST00000593582 GON4LQ3T8J9 2241 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 I6L893 689 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-203ENST00000593582 ARHGAP33O14559 1287 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 TEX33O43247 280 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 SRGAP2O75044 1071 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 SEMA4FO95754 770 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 CALB1P05937 261 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 KRT3P12035 628 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 SDC4P31431 198 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 ACSL1P33121 698 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 CST6Q15828 149 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 CDO1Q16878 200 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 KLHL40Q2TBA0 621 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 ARL13BQ3SXY8 428 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 USP30Q70CQ3 517 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 MMAAQ8IVH4 418 aaKnown RBP15.7■□□□□ 0.1
TRIM28-203ENST00000593582 RXFP2Q8WXD0 754 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 AGPAT1Q99943 283 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 PABPC3Q9H361 631 aaKnown RBP15.7■□□□□ 0.1
TRIM28-203ENST00000593582 SGK2Q9HBY8 427 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 FSCN3Q9NQT6 498 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 MYO6Q9UM54 1294 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 SNX10Q9Y5X0 201 aa15.7■□□□□ 0.1
TRIM28-203ENST00000593582 NCOR2Q9Y618 2525 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 A0A1B0GTW7 788 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 DRGXA6NNA5 263 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 E9PAM4 449 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 CNTN5O94779 1100 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 ENDOD1O94919 500 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 KCNK5O95279 499 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 VASPP50552 380 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-203ENST00000593582 GSCP56915 257 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-203ENST00000593582 KRT83P78385 493 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 PTP4A2Q12974 167 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 ELAVL3Q14576 367 aaKnown RBP15.69■□□□□ 0.1
TRIM28-203ENST00000593582 CCDC14Q49A88 953 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 ACCSLQ4AC99 568 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 ALFQ53S48 1182 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 C6orf118Q5T5N4 469 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 SETD3Q86TU7 594 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-203ENST00000593582 PHF13Q86YI8 300 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-203ENST00000593582 ZNF683Q8IZ20 524 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 HDDC3Q8N4P3 179 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 ZCCHC9Q8N567 271 aaKnown RBP15.69■□□□□ 0.1
TRIM28-203ENST00000593582 OR52K2Q8NGK3 314 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 SNX19Q92543 992 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 PTPRN2Q92932 1015 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 ALG14Q96F25 216 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 OMDQ99983 421 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 C2orf49Q9BVC5 232 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-203ENST00000593582 SELENOOQ9BVL4 669 aa15.69■□□□□ 0.1
TRIM28-203ENST00000593582 C6orf106Q9H6K1 298 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-203ENST00000593582 TMPRSS4Q9NRS4 437 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms