RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 SLC12A1Q13621 1099 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 STX1AQ16623 288 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 UAP1L1Q3KQV9 507 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 SLC25A52Q3SY17 297 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 RABGAP1LQ5R372 815 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 NAA35Q5VZE5 725 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 ZNF776Q68DI1 518 aaPredicted RBP17.96■□□□□ 0.47
SMG6-214ENST00000573827 ARCQ7LC44 396 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 ERICH1Q86X53 443 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 ZNF677Q86XU0 584 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 DHX40Q8IX18 779 aaKnown RBP17.96■□□□□ 0.47
SMG6-214ENST00000573827 ZCCHC9Q8N567 271 aaKnown RBP17.96■□□□□ 0.47
SMG6-214ENST00000573827 MINDY1Q8N5J2 469 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 CPA5Q8WXQ8 436 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 PTPRN2Q92932 1015 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 RPL10LQ96L21 214 aaKnown RBP17.96■□□□□ 0.47
SMG6-214ENST00000573827 PABPC3Q9H361 631 aaKnown RBP17.96■□□□□ 0.47
SMG6-214ENST00000573827 TMPRSS4Q9NRS4 437 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 TMEM63CQ9P1W3 806 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 ZNF212Q9UDV6 495 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 VANGL2Q9ULK5 521 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 TBC1D30Q9Y2I9 924 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.96■□□□□ 0.47
SMG6-214ENST00000573827 SNX10Q9Y5X0 201 aa17.96■□□□□ 0.47
SMG6-214ENST00000573827 A0A1B0GTW7 788 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 TARSL2A2RTX5 802 aaKnown RBP17.95■□□□□ 0.46
SMG6-214ENST00000573827 CNTN5O94779 1100 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 CEACAM1P13688 526 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 VAV1P15498 845 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 MMP8P22894 467 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 SOX5P35711 763 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 NUMBP49757 651 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 RNASE9P60153 205 aaKnown RBP17.95■□□□□ 0.46
SMG6-214ENST00000573827 GRIK2Q13002 908 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 MTA1Q13330 715 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 SYCP1Q15431 976 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 ALFQ53S48 1182 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 BRMS1LQ5PSV4 323 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 FAM102AQ5T9C2 384 aaPredicted RBP17.95■□□□□ 0.46
SMG6-214ENST00000573827 USP30Q70CQ3 517 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 RGL4Q8IZJ4 473 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 DEFB124Q8NES8 71 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 FAM131CQ96AQ9 280 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 RPRD1AQ96P16 312 aaPredicted RBP17.95■□□□□ 0.46
SMG6-214ENST00000573827 PCDHB18PQ96TA0 734 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 FEM1AQ9BSK4 669 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 TKTL2Q9H0I9 626 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 NLRC4Q9NPP4 1024 aa17.95■□□□□ 0.46
SMG6-214ENST00000573827 ANKRD11Q6UB99 2663 aaPredicted RBP17.94■□□□□ 0.46
SMG6-214ENST00000573827 IGLV3-10A0A075B6K4 115 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 EDDM13A0A1B0GTR0 161 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 DRGXA6NNA5 263 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 MEI4A8MW99 385 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 ENDOD1O94919 500 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 SEMA4FO95754 770 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 IGHV4-34P06331 123 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 UNGP13051 313 aaPredicted RBP17.94■□□□□ 0.46
SMG6-214ENST00000573827 KCNA4P22459 653 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 SULT1E1P49888 294 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 ST8SIA6P61647 398 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 CST6Q15828 149 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 RAB6CQ53S08 254 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 CCDC183Q5T5S1 534 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 SASS6Q6UVJ0 657 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 RNF34Q969K3 372 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 ERGIC2Q96RQ1 377 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 GTPBP2Q9BX10 602 aaKnown RBP17.94■□□□□ 0.46
SMG6-214ENST00000573827 RAB6CQ9H0N0 254 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 PDCL3Q9H2J4 239 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 OSGEPQ9NPF4 335 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 ADAMTS1Q9UHI8 967 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 EIF2B4Q9UI10 523 aaKnown RBP17.94■□□□□ 0.46
SMG6-214ENST00000573827 STAP1Q9ULZ2 295 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 DAAM1Q9Y4D1 1078 aa17.94■□□□□ 0.46
SMG6-214ENST00000573827 NYNRINQ9P2P1 1898 aaKnown RBP17.94■□□□□ 0.46
SMG6-214ENST00000573827 DOCK4Q8N1I0 1966 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 MID1O15344 667 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 BCAT2O15382 392 aaPredicted RBP17.93■□□□□ 0.46
SMG6-214ENST00000573827 ATP9BO43861 1147 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 CLDN11O75508 207 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 MOCS3O95396 460 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 MBD3O95983 291 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 DNTTP04053 509 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 ATP1A3P13637 1013 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 GNSP15586 552 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 CCDC117Q8IWD4 279 aaPredicted RBP17.93■□□□□ 0.46
SMG6-214ENST00000573827 STK40Q8N2I9 435 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 AADATQ8N5Z0 425 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 BIRC7Q96CA5 298 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 C1orf74Q96LT6 269 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 PSMB7Q99436 277 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 BTBD1Q9H0C5 482 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 WDCPQ9H6R7 721 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 SGK2Q9HBY8 427 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 SCML1Q9UN30 329 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 DSPP15924 2871 aaKnown RBP17.93■□□□□ 0.46
SMG6-214ENST00000573827 LAMA5O15230 3695 aa17.93■□□□□ 0.46
SMG6-214ENST00000573827 PKD1L2Q7Z442 2459 aa17.92■□□□□ 0.46
SMG6-214ENST00000573827 ZFYVE26Q68DK2 2539 aa17.92■□□□□ 0.46
SMG6-214ENST00000573827 GOLGA8SH3BPF8 625 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms