RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 IL1BP01584 269 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 SRPRAP08240 638 aaKnown RBP16.03■□□□□ 0.16
NME3-211ENST00000568561 BMP6P22004 513 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 MZF1P28698 734 aaPredicted RBP16.03■□□□□ 0.16
NME3-211ENST00000568561 CD38P28907 300 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 RPL34P49207 117 aaKnown RBP16.03■□□□□ 0.16
NME3-211ENST00000568561 STX17P56962 302 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 CETN1Q12798 172 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 ARID5BQ14865 1188 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 EID2Q8N6I1 236 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 KDM1BQ8NB78 822 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 EHBP1Q8NDI1 1231 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 PTPRN2Q92932 1015 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 SERAC1Q96JX3 654 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 CNDP2Q96KP4 475 aaKnown RBP16.03■□□□□ 0.16
NME3-211ENST00000568561 DCBLD2Q96PD2 775 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 DKK4Q9UBT3 224 aa16.03■□□□□ 0.16
NME3-211ENST00000568561 C10orf142B7Z368 130 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 BIN1O00499 593 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 P4HA2O15460 535 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 ADH1BP00325 375 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 ITGAVP06756 1048 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 GOT1P17174 413 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 EPHA8P29322 1005 aaPredicted RBP16.02■□□□□ 0.16
NME3-211ENST00000568561 MAT2AP31153 395 aaKnown RBP16.02■□□□□ 0.16
NME3-211ENST00000568561 GGCXP38435 758 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 CCR5P51681 352 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 NUCB2P80303 420 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 CENPCQ03188 943 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 KCNH2Q12809 1159 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 SFSWAPQ12872 951 aaKnown RBP16.02■□□□□ 0.16
NME3-211ENST00000568561 POM121L1PQ3SYA9 428 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.02■□□□□ 0.16
NME3-211ENST00000568561 SND1Q7KZF4 910 aaKnown RBP eCLIP16.02■□□□□ 0.166e-7■■□□□ 12.7
NME3-211ENST00000568561 TRIM59Q8IWR1 403 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 SAP25Q8TEE9 199 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 BTN2A3PQ96KV6 586 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 SLC4A5Q9BY07 1137 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 FAM204AQ9H8W3 233 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 SCUBE2Q9NQ36 999 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 GDF3Q9NR23 364 aa16.02■□□□□ 0.16
NME3-211ENST00000568561 TBC1D3DA0A087WVF3 549 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3IA0A087WXS9 549 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3EA0A087X179 549 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3KA0A087X1G2 549 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3FA6NER0 549 aaPredicted RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 PPP1R3GB7ZBB8 358 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3LB9A6J9 549 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 F5H5T6 163 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 THAP12O43422 761 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 DFNA5O60443 496 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 RTN2O75298 545 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 LDOC1O95751 146 aaPredicted RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 IGLV3-25P01717 112 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3HP0C7X1 549 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 C5AR1P21730 350 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 DRD3P35462 400 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 ACADSBP45954 432 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 IRAK1P51617 712 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 BNIP3Q12983 259 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 ELAVL3Q14576 367 aaKnown RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3GQ6DHY5 549 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3CQ6IPX1 549 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 GJB7Q6PEY0 223 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TBC1D3Q8IZP1 549 aaPredicted RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 CCAR2Q8N163 923 aaKnown RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 PDCD7Q8N8D1 485 aaKnown RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 SKA1Q96BD8 255 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 TIGD1Q96MW7 591 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 GTPBP4Q9BZE4 634 aaKnown RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 POPDC2Q9HBU9 364 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 UBE2TQ9NPD8 197 aaPredicted RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 HOOK1Q9UJC3 728 aaKnown RBP16.01■□□□□ 0.15
NME3-211ENST00000568561 CNTN6Q9UQ52 1028 aa16.01■□□□□ 0.15
NME3-211ENST00000568561 PTPRQQ9UMZ3 2332 aa16■□□□□ 0.15
NME3-211ENST00000568561 TDRD6O60522 2096 aaKnown RBP16■□□□□ 0.15
NME3-211ENST00000568561 KCNU1A8MYU2 1149 aa16■□□□□ 0.15
NME3-211ENST00000568561 RFPL3O75679 317 aa16■□□□□ 0.15
NME3-211ENST00000568561 GRAP2O75791 330 aa16■□□□□ 0.15
NME3-211ENST00000568561 AFPP02771 609 aaKnown RBP16■□□□□ 0.15
NME3-211ENST00000568561 GNA15P30679 374 aa16■□□□□ 0.15
NME3-211ENST00000568561 ACADVLP49748 655 aa16■□□□□ 0.15
NME3-211ENST00000568561 NXPH1P58417 271 aa16■□□□□ 0.15
NME3-211ENST00000568561 YWHAZP63104 245 aaKnown RBP16■□□□□ 0.15
NME3-211ENST00000568561 APBA1Q02410 837 aa16■□□□□ 0.15
NME3-211ENST00000568561 PDCLQ13371 301 aa16■□□□□ 0.15
NME3-211ENST00000568561 CXorf57Q6NSI4 855 aaKnown RBP16■□□□□ 0.15
NME3-211ENST00000568561 SPATS2Q86XZ4 545 aaKnown RBP16■□□□□ 0.15
NME3-211ENST00000568561 PASD1Q8IV76 773 aa16■□□□□ 0.15
NME3-211ENST00000568561 OR52K2Q8NGK3 314 aa16■□□□□ 0.15
NME3-211ENST00000568561 FRS2Q8WU20 508 aa16■□□□□ 0.15
NME3-211ENST00000568561 ZNF606Q8WXB4 792 aa16■□□□□ 0.15
NME3-211ENST00000568561 PRMT1Q99873 361 aaKnown RBP16■□□□□ 0.15
NME3-211ENST00000568561 CRACR2AQ9BSW2 395 aa16■□□□□ 0.15
NME3-211ENST00000568561 SARDHQ9UL12 918 aa16■□□□□ 0.15
NME3-211ENST00000568561 CA5BQ9Y2D0 317 aa16■□□□□ 0.15
NME3-211ENST00000568561 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16■□□□□ 0.15
NME3-211ENST00000568561 HELZ2Q9BYK8 2649 aaKnown RBP16■□□□□ 0.15
NME3-211ENST00000568561 SHROOM3Q8TF72 1996 aa16■□□□□ 0.15
NME3-211ENST00000568561 TLR4O00206 839 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms