RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ALG14Q96F25 216 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 ITM2CQ9NQX7 267 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 TMEM51Q9NW97 253 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 SLCO3A1Q9UIG8 710 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 ERVW-1Q9UQF0 538 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 PAXBP1Q9Y5B6 917 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.48■□□□□ 0.07
VPS39-210ENST00000568357 TMCO5BA8MYB1 307 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 MOCS3O95396 460 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 ASLP04424 464 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 PRKCIP41743 596 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 PTPN9P43378 593 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 PLK1P53350 603 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 SHC2P98077 582 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 ECT2LQ008S8 904 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 RPL6Q02878 288 aaKnown RBP15.48■□□□□ 0.07
VPS39-210ENST00000568357 ZNF177Q13360 481 aaPredicted RBP15.48■□□□□ 0.07
VPS39-210ENST00000568357 ARMCX6Q7L4S7 300 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 DNAAF5Q86Y56 855 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 OR2T3Q8NH03 318 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 SIPA1Q96FS4 1042 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 HAPLN3Q96S86 360 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 FEM1AQ9BSK4 669 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 SELENOOQ9BVL4 669 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 MAGEB5Q9BZ81 275 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 RXFP3Q9NSD7 469 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 IFNKQ9P0W0 207 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 USP36Q9P275 1121 aaKnown RBP15.48■□□□□ 0.07
VPS39-210ENST00000568357 SUN2Q9UH99 717 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 TBC1D30Q9Y2I9 924 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 SDK1Q7Z5N4 2213 aa15.48■□□□□ 0.07
VPS39-210ENST00000568357 TTC34A8MYJ7 566 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 SRGAP2O75044 1071 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 CLDN11O75508 207 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 PROS1P07225 676 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 C7P10643 843 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 RRM1P23921 792 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 ADRA1BP35368 520 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 TPMTP51580 245 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 CDH4P55283 916 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 HDAC4P56524 1084 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 ST8SIA6P61647 398 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 RPL7AP62424 266 aaKnown RBP15.47■□□□□ 0.07
VPS39-210ENST00000568357 SLC12A1Q13621 1099 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 SPDYCQ5MJ68 293 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 PPP1R15BQ5SWA1 713 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 TCEAL6Q6IPX3 200 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 SLC36A4Q6YBV0 504 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 CACUL1Q86Y37 369 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 CPLX3Q8WVH0 158 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 PRCCQ92733 491 aaPredicted RBP15.47■□□□□ 0.07
VPS39-210ENST00000568357 TCEAL3Q969E4 200 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 RPL10LQ96L21 214 aaKnown RBP15.47■□□□□ 0.07
VPS39-210ENST00000568357 NUP58Q9BVL2 599 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 VPS45Q9NRW7 570 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 TMEM74BQ9NUR3 256 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 MPP6Q9NZW5 540 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 OR51B4Q9Y5P0 310 aa15.47■□□□□ 0.07
VPS39-210ENST00000568357 ABCA7Q8IZY2 2146 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 IGLV3-10A0A075B6K4 115 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 A0A1W2PQJ5 194 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 PATE3B3GLJ2 98 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 E9PAM4 449 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 DDX3XO00571 662 aaKnown RBP eCLIP15.46■□□□□ 0.071e-8■■■□□ 16.8
VPS39-210ENST00000568357 SIN3BO75182 1162 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 SRPRAP08240 638 aaKnown RBP15.46■□□□□ 0.07
VPS39-210ENST00000568357 GPD1P21695 349 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 CD6P30203 668 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 STK19P49842 368 aaPredicted RBP15.46■□□□□ 0.07
VPS39-210ENST00000568357 RPS14P62263 151 aaKnown RBP15.46■□□□□ 0.07
VPS39-210ENST00000568357 KLHL30Q0D2K2 578 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 ARID5BQ14865 1188 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 NFKBIBQ15653 356 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 HNRNPA1L2Q32P51 320 aaKnown RBP15.46■□□□□ 0.07
VPS39-210ENST00000568357 C9orf64Q5T6V5 341 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 RNF219Q5W0B1 726 aaPredicted RBP15.46■□□□□ 0.07
VPS39-210ENST00000568357 DNAJC24Q6P3W2 148 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 LRRC31Q6UY01 552 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 STRADAQ7RTN6 431 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 CYP2U1Q7Z449 544 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 SLC41A1Q8IVJ1 513 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 CCDC185Q8N715 623 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 KDM1BQ8NB78 822 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 FAM172AQ8WUF8 416 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 PIGKQ92643 395 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 TOE1Q96GM8 510 aaKnown RBP15.46■□□□□ 0.07
VPS39-210ENST00000568357 VCPIP1Q96JH7 1222 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 MCEEQ96PE7 176 aa15.46■□□□□ 0.07
VPS39-210ENST00000568357 WSB2Q9NYS7 404 aaPredicted RBP15.46■□□□□ 0.07
VPS39-210ENST00000568357 C1QTNF9BB2RNN3 333 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 FAM72CH0Y354 149 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 AP5Z1O43299 807 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 IGLV3-19P01714 112 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 FTLP02792 175 aaPredicted RBP15.45■□□□□ 0.06
VPS39-210ENST00000568357 C1QTNF9P0C862 333 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 GZMAP12544 262 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 ITPKAP23677 461 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 ZNF143P52747 638 aaPredicted RBP15.45■□□□□ 0.06
VPS39-210ENST00000568357 OXCT1P55809 520 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 OGDHQ02218 1023 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms