RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 SH3GL2Q99962 352 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 CORO1BQ9BR76 489 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ROPN1BQ9BZX4 212 aaPredicted RBP9.19□□□□□ -0.94
VPS39-207ENST00000563692 KLC2Q9H0B6 622 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 CATSPERBQ9H7T0 1116 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ROPN1Q9HAT0 212 aaPredicted RBP9.19□□□□□ -0.94
VPS39-207ENST00000563692 NMUR1Q9HB89 426 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 USP29Q9HBJ7 922 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ARHGEF4Q9NR80 690 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 HCFC1R1Q9NWW0 138 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 GDE1Q9NZC3 331 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 DNMT3BQ9UBC3 853 aaKnown RBP9.19□□□□□ -0.94
VPS39-207ENST00000563692 SFMBT1Q9UHJ3 866 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 SHOC2Q9UQ13 582 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 TLR6Q9Y2C9 796 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 INSL5Q9Y5Q6 135 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 HMGB1P1B2RPK0 211 aaPredicted RBP9.18□□□□□ -0.94
VPS39-207ENST00000563692 FGF10O15520 208 aaPredicted RBP9.18□□□□□ -0.94
VPS39-207ENST00000563692 NARSO43776 548 aaKnown RBP9.18□□□□□ -0.94
VPS39-207ENST00000563692 RNF40O75150 1001 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 GCATO75600 419 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 TTC4O95801 387 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 APOEP02649 317 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 NUDT17P0C025 328 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 CSH1P0DML2 217 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 CSH2P0DML3 217 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 EPHB2P29323 1055 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 PPP3CCP48454 512 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 GPR15P49685 360 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 PLXNA3P51805 1871 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 EPHB3P54753 998 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 BASP1P80723 227 aaKnown RBP9.18□□□□□ -0.94
VPS39-207ENST00000563692 SARNPP82979 210 aaKnown RBP9.18□□□□□ -0.94
VPS39-207ENST00000563692 PFKPQ01813 784 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 GBE1Q04446 702 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 TWF1Q12792 350 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 TAF10Q12962 218 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 DPYSQ14117 519 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 SLC29A2Q14542 456 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 VEPH1Q14D04 833 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 UAP1Q16222 522 aaPredicted RBP9.18□□□□□ -0.94
VPS39-207ENST00000563692 C6orf118Q5T5N4 469 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 IER5LQ5T953 404 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 LRRC31Q6UY01 552 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 PRUNE1Q86TP1 453 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 NPAS3Q8IXF0 933 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 PDIK1LQ8N165 341 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 ZNF276Q8N554 614 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 LZTR1Q8N653 840 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 ATP6V0D2Q8N8Y2 350 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 CCNYQ8ND76 341 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 STKLD1Q8NE28 680 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 GIPC2Q8TF65 315 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 HTR3CQ8WXA8 447 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 ING5Q8WYH8 240 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 QKIQ96PU8 341 aaKnown RBP eCLIP9.18□□□□□ -0.94
VPS39-207ENST00000563692 RBM15Q96T37 977 aaKnown RBP eCLIP9.18□□□□□ -0.94
VPS39-207ENST00000563692 MAGEB5Q9BZ81 275 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 PHACTR1Q9C0D0 580 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 SIK2Q9H0K1 926 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 STMN4Q9H169 189 aaPredicted RBP9.18□□□□□ -0.94
VPS39-207ENST00000563692 SEMA4AQ9H3S1 761 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 C10orf88Q9H8K7 445 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 MYO10Q9HD67 2058 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 ASAH2Q9NR71 780 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 ARHGEF3Q9NR81 526 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 DTLQ9NZJ0 730 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 GMIPQ9P107 970 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 VPS18Q9P253 973 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 XPO7Q9UIA9 1087 aaKnown RBP9.18□□□□□ -0.94
VPS39-207ENST00000563692 CA14Q9ULX7 337 aa9.18□□□□□ -0.94
VPS39-207ENST00000563692 TSC2P49815 1807 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 GOLGA6CA6NDK9 693 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 A6NNZ2 444 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 KCNU1A8MYU2 1149 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 E7EVH7 732 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 H3BQF6 201 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 DCLK1O15075 740 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 ALOX15BO15296 676 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 CHADO15335 359 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 RIPK2O43353 540 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 GALR2O43603 387 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 PAGE1O75459 146 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 SEC24AO95486 1093 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 GOLGA6DP0CG33 693 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 MYL4P12829 197 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 PHBP35232 272 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 CHKAP35790 457 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 ATP5C1P36542 298 aaKnown RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 FDFT1P37268 417 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 MAGEA4P43358 317 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 LMAN1P49257 510 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 GDF10P55107 478 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 MLLT6P55198 1093 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 NRG1Q02297 640 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 ZNF33AQ06730 810 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 AP1B1Q10567 949 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 EFEMP1Q12805 493 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 SLC10A2Q12908 348 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 SEMA3BQ13214 749 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms