RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 NIPA2Q8N8Q9 360 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 ZBTB44Q8NCP5 570 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 ATRIPQ8WXE1 791 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 EIF3CQ99613 913 aaKnown RBP13.97□□□□□ -0.17
SHMT2-228ENST00000557302 MUC3BQ9H195 1237 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 RETREG1Q9H6L5 497 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 LUC7LQ9NQ29 371 aaKnown RBP13.97□□□□□ -0.17
SHMT2-228ENST00000557302 FAM86C1Q9NVL1 165 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 GPATCH2LQ9NWQ4 482 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 LCMT1Q9UIC8 334 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 VPS28Q9UK41 221 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 INTUQ9ULD6 942 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 USP18Q9UMW8 372 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 AP4E1Q9UPM8 1137 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 RAD54BQ9Y620 910 aa13.97□□□□□ -0.17
SHMT2-228ENST00000557302 CFAP54Q96N23 3096 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 CCDC163A0A0D9SF12 145 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 A0A1W2PQF6 199 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 TCRBV21S2A2A0A5A6 115 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 SOWAHDA6NJG2 315 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 WASH3PC4AMC7 463 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 ZBTB24O43167 697 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-228ENST00000557302 CREB3O43889 395 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 IPO7O95373 1038 aaKnown RBP13.96□□□□□ -0.17
SHMT2-228ENST00000557302 LCA5LO95447 670 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 RHOQP17081 205 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 OR1E1P30953 314 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 HTR7P34969 479 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 MAGEA1P43355 309 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 MAPKAPK2P49137 400 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 PLK1P53350 603 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 ST8SIA6P61647 398 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 ECT2LQ008S8 904 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 SULT2A1Q06520 285 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 BOLA3Q53S33 107 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 DAB2IPQ5VWQ8 1189 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 RNF219Q5W0B1 726 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-228ENST00000557302 ANO7Q6IWH7 933 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 WDR5BQ86VZ2 330 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 PSTKQ8IV42 348 aaKnown RBP13.96□□□□□ -0.17
SHMT2-228ENST00000557302 APCDD1Q8J025 514 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 OR52K2Q8NGK3 314 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 SLC35G2Q8TBE7 412 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 RFFLQ8WZ73 363 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 PEBP4Q96S96 227 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 BAG1Q99933 345 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-228ENST00000557302 FEM1AQ9BSK4 669 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 SNRNP25Q9BV90 132 aaKnown RBP13.96□□□□□ -0.17
SHMT2-228ENST00000557302 DHX35Q9H5Z1 703 aaKnown RBP13.96□□□□□ -0.17
SHMT2-228ENST00000557302 BCCIPQ9P287 314 aaKnown RBP eCLIP13.96□□□□□ -0.17
SHMT2-228ENST00000557302 ZNF212Q9UDV6 495 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 EBF1Q9UH73 591 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 R4GN57 208 aa13.96□□□□□ -0.17
SHMT2-228ENST00000557302 ILVBLA1L0T0 632 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 GOLGA6L3A6NEY3 463 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 AXIN1O15169 862 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 SYNCRIPO60506 623 aaKnown RBP13.95□□□□□ -0.18
SHMT2-228ENST00000557302 PROSCO94903 275 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 NDUFA10O95299 355 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 EPHX1P07099 455 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 SRPRAP08240 638 aaKnown RBP13.95□□□□□ -0.18
SHMT2-228ENST00000557302 HLA-EP13747 358 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 PRKCHP24723 683 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 EPHB2P29323 1055 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 NBL1P41271 181 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 CTSOP43234 321 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-228ENST00000557302 NUMBP49757 651 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 TPI1P60174 286 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 SEMA3BQ13214 749 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 CA9Q16790 459 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 KIAA1211LQ6NV74 962 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 ZNF783Q6ZMS7 281 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 CYP4V2Q6ZWL3 525 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-228ENST00000557302 NLRP14Q86W24 1093 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 RASSF3Q86WH2 238 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 RHOT2Q8IXI1 618 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 KDM1BQ8NB78 822 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 MDGA1Q8NFP4 955 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 HMGB4Q8WW32 186 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 ALG14Q96F25 216 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 C2orf49Q9BVC5 232 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-228ENST00000557302 TMEM245Q9H330 911 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 OSGEPQ9NPF4 335 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 TMEM248Q9NWD8 314 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 NEU3Q9UQ49 428 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 ERVW-1Q9UQF0 538 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 PCDHA13Q9Y5I0 950 aa13.95□□□□□ -0.18
SHMT2-228ENST00000557302 EPN1Q9Y6I3 576 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-228ENST00000557302 WDR87Q6ZQQ6 2873 aa13.94□□□□□ -0.18
SHMT2-228ENST00000557302 EEF2KO00418 725 aaKnown RBP13.94□□□□□ -0.18
SHMT2-228ENST00000557302 FGF10O15520 208 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-228ENST00000557302 LILRB5O75023 590 aa13.94□□□□□ -0.18
SHMT2-228ENST00000557302 TCF4P15884 667 aa13.94□□□□□ -0.18
SHMT2-228ENST00000557302 IL1R2P27930 398 aa13.94□□□□□ -0.18
SHMT2-228ENST00000557302 MAN1A1P33908 653 aa13.94□□□□□ -0.18
SHMT2-228ENST00000557302 NNMTP40261 264 aa13.94□□□□□ -0.18
SHMT2-228ENST00000557302 SSR1P43307 286 aaKnown RBP13.94□□□□□ -0.18
SHMT2-228ENST00000557302 ZNF135P52742 658 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-228ENST00000557302 GSDMDP57764 484 aa13.94□□□□□ -0.18
SHMT2-228ENST00000557302 KRT83P78385 493 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms