RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SP100P23497 879 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 ADD2P35612 726 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 BTDP43251 543 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 RXRGP48443 463 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 PRKAG1P54619 331 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 BCAT1P54687 386 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 POU5F1Q01860 360 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 NSUN2Q08J23 767 aaKnown RBP eCLIP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 NEXNQ0ZGT2 675 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 HYAL1Q12794 435 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 ITGA7Q13683 1181 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 USP10Q14694 798 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 GPNMBQ14956 572 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 GAGE13Q4V321 117 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 KIAA1755Q5JYT7 1200 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 AGBL4Q5VU57 503 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 FAM160B1Q5W0V3 765 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SLFN13Q68D06 897 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 IGFL4Q6B9Z1 124 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 TANGO2Q6ICL3 276 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 RINLQ6ZS11 566 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SEM1Q6ZVN7 128 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 USP49Q70CQ1 688 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 USP30Q70CQ3 517 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 USP51Q70EK9 711 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 RAB11FIP2Q7L804 512 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 RASGRP3Q8IV61 690 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 NRSN1Q8IZ57 195 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 CMTM4Q8IZR5 234 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 TMEM57Q8N5G2 664 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 VGLL2Q8N8G2 317 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 CEP70Q8NHQ1 597 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 TBC1D15Q8TC07 691 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 PHOSPHO2Q8TCD6 241 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SPPL3Q8TCT6 385 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 ZNF384Q8TF68 577 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SNRNP27Q8WVK2 155 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 THAP4Q8WY91 577 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SCAMP4Q969E2 229 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 MRPL38Q96DV4 380 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 TRAPPC9Q96Q05 1148 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 MYOCQ99972 504 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 CPEB1Q9BZB8 566 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 TTYH3Q9C0H2 523 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 REXO4Q9GZR2 422 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SPATC1LQ9H0A9 340 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 EPS8L2Q9H6S3 715 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 RPAP3Q9H6T3 665 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 ELAC1Q9H777 363 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 DNAJC18Q9H819 358 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 PLEKHA5Q9HAU0 1116 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 NOD2Q9HC29 1040 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 TMEM8AQ9HCN3 771 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 KRT84Q9NSB2 600 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 TBC1D22BQ9NU19 505 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 BLOC1S4Q9NUP1 217 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 IGSF9Q9P2J2 1179 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 ZHX1Q9UKY1 873 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SHOC2Q9UQ13 582 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 HS3ST4Q9Y661 456 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 DDX49Q9Y6V7 483 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 MAST3O60307 1309 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 KIF16BQ96L93 1317 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 MAPK8IP3Q9UPT6 1336 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 PTPRSQ13332 1948 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 DOCK2Q92608 1830 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.14□□□□□ -1.75
LIMA1-208ENST00000551691 C2orf78A6NCI8 922 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 B5MCH6 92 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 H7C4K7 107 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 CCP110O43303 1012 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 DUSP11O75319 330 aaKnown RBP4.14□□□□□ -1.75
LIMA1-208ENST00000551691 TBX10O75333 385 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 VPS4BO75351 444 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 KRT38O76015 456 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 KLHL18O94889 574 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 AGFG2O95081 481 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 PDE8BO95263 885 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 TBX18O95935 607 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 GH2P01242 217 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 VIPP01282 170 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 LMNAP02545 664 aaKnown RBP4.14□□□□□ -1.75
LIMA1-208ENST00000551691 HOXB7P09629 217 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 IQCF3P0C7M6 154 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 CKMT1AP12532 417 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 CAPN3P20807 821 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 PTMSP20962 102 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 CST5P28325 142 aaPredicted RBP4.14□□□□□ -1.75
LIMA1-208ENST00000551691 GABRB3P28472 473 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 ATICP31939 592 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 LIFRP42702 1097 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 PTDSS1P48651 473 aaKnown RBP4.14□□□□□ -1.75
LIMA1-208ENST00000551691 RRP1P56182 461 aaKnown RBP4.14□□□□□ -1.75
LIMA1-208ENST00000551691 CLRN1P58418 232 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 ACTR2P61160 394 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 WDR5P61964 334 aaKnown RBP4.14□□□□□ -1.75
LIMA1-208ENST00000551691 PIGFQ07326 219 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 SCAPQ12770 1279 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 GPS1Q13098 491 aa4.14□□□□□ -1.75
LIMA1-208ENST00000551691 GPM6BQ13491 265 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms