RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 IQUBQ8NA54 791 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 ZNF248Q8NDW4 579 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 GOLGA5Q8TBA6 731 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 WBP1Q96G27 269 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 SERAC1Q96JX3 654 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 HEXIM2Q96MH2 286 aaKnown RBP10.9□□□□□ -0.66
VPS29-208ENST00000550267 OMDQ99983 421 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 BACH2Q9BYV9 841 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 ULBP1Q9BZM6 244 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 ADAMTS1Q9UHI8 967 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 SFMBT1Q9UHJ3 866 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 STOML2Q9UJZ1 356 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 HBS1LQ9Y450 684 aaKnown RBP10.9□□□□□ -0.66
VPS29-208ENST00000550267 ASXL3Q9C0F0 2248 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 GOLGA6L7A0A1B0GV03 622 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 B8ZZF3 427 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 MEN1O00255 615 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 TULP2O00295 520 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 ARHGAP6O43182 974 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 MSI1O43347 362 aaKnown RBP10.89□□□□□ -0.67
VPS29-208ENST00000550267 TBL1XO60907 577 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 RNASEH1O60930 286 aaKnown RBP10.89□□□□□ -0.67
VPS29-208ENST00000550267 SDC3O75056 442 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 MT-CO3P00414 261 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 PDCP20941 246 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 SYT1P21579 422 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 ACP1P24666 158 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 SLC8A1P32418 973 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 RXRGP48443 463 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 NASPP49321 788 aaPredicted RBP10.89□□□□□ -0.67
VPS29-208ENST00000550267 CCR5P51681 352 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 TKTL1P51854 596 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 PCBP4P57723 403 aaKnown RBP10.89□□□□□ -0.67
VPS29-208ENST00000550267 TMPRSS3P57727 454 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 ZNF445P59923 1031 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 ST8SIA6P61647 398 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 CUL4BQ13620 913 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 HNRNPA1L2Q32P51 320 aaKnown RBP10.89□□□□□ -0.67
VPS29-208ENST00000550267 SLC45A4Q5BKX6 768 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 ADGRF1Q5T601 910 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 BROXQ5VW32 411 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 RFWD3Q6PCD5 774 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 SHC4Q6S5L8 630 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 MMAAQ8IVH4 418 aaKnown RBP10.89□□□□□ -0.67
VPS29-208ENST00000550267 OXR1Q8N573 874 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 AADATQ8N5Z0 425 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 LINC00301Q8NCQ3 95 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 TAS1R2Q8TE23 839 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 EDEM1Q92611 657 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 MRGPRX3Q96LB0 322 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 UBXN6Q9BZV1 441 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 IMPG2Q9BZV3 1241 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 NIF3L1Q9GZT8 377 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 ERVMER34-1Q9H9K5 563 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 OLA1Q9NTK5 396 aaKnown RBP10.89□□□□□ -0.67
VPS29-208ENST00000550267 STIM2Q9P246 746 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 FZD4Q9ULV1 537 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 GOLGA4Q13439 2230 aaKnown RBP10.89□□□□□ -0.67
VPS29-208ENST00000550267 ZNF462Q96JM2 2506 aa10.89□□□□□ -0.67
VPS29-208ENST00000550267 CFAP46Q8IYW2 2715 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 PVALEFA0A1B0GWK0 134 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 TRIM38O00635 465 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 IKBKBO14920 756 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 SPTLC2O15270 562 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 LATS1O95835 1130 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 ZBED1O96006 694 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 NR3C1P04150 777 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 MPOP05164 745 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 SLFN14P0C7P3 912 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 TRIM49P0CI25 452 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 TRIM49CP0CI26 452 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 KRT10P13645 584 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 CSKP41240 450 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 AFMP43652 599 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 GCLMP48507 274 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 PSMD8P48556 350 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 ADPRHP54922 357 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 PPP2CBP62714 309 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 PPP2CAP67775 309 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 POU4F2Q12837 409 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 SFSWAPQ12872 951 aaKnown RBP10.88□□□□□ -0.67
VPS29-208ENST00000550267 CUL4AQ13619 759 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 PLA2G4EQ3MJ16 856 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 C9orf64Q5T6V5 341 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 PIK3R6Q5UE93 754 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 CEP135Q66GS9 1140 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 PM20D1Q6GTS8 502 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 SND1Q7KZF4 910 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS29-208ENST00000550267 GRAMD1CQ8IYS0 662 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 OR14C36Q8NHC7 312 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 RNF139Q8WU17 664 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 TTC9Q92623 222 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 TTC17Q96AE7 1141 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 HIC2Q96JB3 615 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 LMLNQ96KR4 655 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 DNAI2Q9GZS0 605 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 KCTD10Q9H3F6 313 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 MMRN2Q9H8L6 949 aa10.88□□□□□ -0.67
VPS29-208ENST00000550267 INTS6Q9UL03 887 aaKnown RBP10.88□□□□□ -0.67
VPS29-208ENST00000550267 MYLKQ15746 1914 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms