RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 LRG1P02750 347 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 HMGA1P17096 107 aaKnown RBP13.77□□□□□ -0.21
PTCH1-215ENST00000547672 PTPN3P26045 913 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 BMPR1AP36894 532 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 IFNAR2P48551 515 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 MAGOHP61326 146 aaKnown RBP13.77□□□□□ -0.21
PTCH1-215ENST00000547672 WASHC5Q12768 1159 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 TWF1Q12792 350 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 HNRNPDQ14103 355 aaKnown RBP13.77□□□□□ -0.21
PTCH1-215ENST00000547672 ZNF638Q14966 1978 aaKnown RBP13.77□□□□□ -0.21
PTCH1-215ENST00000547672 C5orf22Q49AR2 442 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 FNBP1LQ5T0N5 605 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 AFMIDQ63HM1 303 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 NAPEPLDQ6IQ20 393 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 ZNF449Q6P9G9 518 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 BBS5Q8N3I7 341 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 SP7Q8TDD2 431 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-215ENST00000547672 CENPTQ96BT3 561 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 SAMD11Q96NU1 681 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 GCNAQ96QF7 691 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 MCOLN1Q9GZU1 580 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 GBA3Q9H227 469 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 LRRC40Q9H9A6 602 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 BFARQ9NZS9 450 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 ZC3H7BQ9UGR2 993 aaKnown RBP13.77□□□□□ -0.21
PTCH1-215ENST00000547672 NUDT5Q9UKK9 219 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 INSL5Q9Y5Q6 135 aa13.77□□□□□ -0.21
PTCH1-215ENST00000547672 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.77□□□□□ -0.21
PTCH1-215ENST00000547672 GREB1Q4ZG55 1949 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 TEX28O15482 410 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 TMEM63AO94886 807 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 SUN1O94901 812 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 VAV1P15498 845 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 EN2P19622 333 aaPredicted RBP13.76□□□□□ -0.21
PTCH1-215ENST00000547672 CA8P35219 290 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 ELK3P41970 407 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 MSH2P43246 934 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 PGFP49763 221 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 GEMP55040 296 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 NAB1Q13506 487 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 TNFAIP8L3Q5GJ75 292 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 PIK3R6Q5UE93 754 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 LEKR1Q6ZMV7 388 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 B4GALNT4Q76KP1 1039 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 C16orf59Q7L2K0 433 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 CHSY1Q86X52 802 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 ANKMY2Q8IV38 441 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 UHMK1Q8TAS1 419 aaKnown RBP13.76□□□□□ -0.21
PTCH1-215ENST00000547672 MRPS31Q92665 395 aaKnown RBP13.76□□□□□ -0.21
PTCH1-215ENST00000547672 PWWP2AQ96N64 755 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 RPRD1AQ96P16 312 aaPredicted RBP13.76□□□□□ -0.21
PTCH1-215ENST00000547672 EBNA1BP2Q99848 306 aaKnown RBP13.76□□□□□ -0.21
PTCH1-215ENST00000547672 MAGEH1Q9H213 219 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 ACSS3Q9H6R3 686 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 CCSER2Q9H7U1 834 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 SAMD15Q9P1V8 674 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 PSMC3IPQ9P2W1 217 aaPredicted RBP13.76□□□□□ -0.21
PTCH1-215ENST00000547672 ZMYM5Q9UJ78 669 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 VANGL2Q9ULK5 521 aa13.76□□□□□ -0.21
PTCH1-215ENST00000547672 IQANK1A0A1B0GTG1 560 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 TCRBV7S3A2A0A539 114 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 TYW5A2RUC4 315 aaKnown RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 SMIM23A6NLE4 172 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 KCNK1O00180 336 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 RAMP2O60895 175 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 CLDN11O75508 207 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 AP2A1O95782 977 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 TBX18O95935 607 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 JCHAINP01591 159 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 TACR2P21452 398 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 CDC25CP30307 473 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 HPDP32754 393 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 MAGEA3P43357 314 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 CDH4P55283 916 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 POLD3Q15054 466 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 LONRF1Q17RB8 773 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 SKIDA1Q1XH10 827 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 ADGRF1Q5T601 910 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 FBXL22Q6P050 247 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 CAND1Q86VP6 1230 aaKnown RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 NLRP14Q86W24 1093 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 ZNF683Q8IZ20 524 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 TAB3Q8N5C8 712 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 NPWQ8N729 165 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 KLHL23Q8NBE8 558 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 LEMD2Q8NC56 503 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 EPS8L3Q8TE67 593 aaKnown RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 CDKL2Q92772 493 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 ARHGEF2Q92974 986 aaKnown RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 ALKBH8Q96BT7 664 aaKnown RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 STAMBPL1Q96FJ0 436 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 ZNF599Q96NL3 588 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 FCRL5Q96RD9 977 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 IL12RB2Q99665 862 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 PRMT1Q99873 361 aaKnown RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 SLC39A8Q9C0K1 460 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 IPO11Q9UI26 975 aaKnown RBP13.75□□□□□ -0.21
PTCH1-215ENST00000547672 RABGEF1Q9UJ41 708 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 MFHAS1Q9Y4C4 1052 aa13.75□□□□□ -0.21
PTCH1-215ENST00000547672 SNX10Q9Y5X0 201 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms