RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF606Q8WXB4 792 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 FAM129BQ96TA1 746 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 NEUROG2Q9H2A3 272 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 PABPC3Q9H361 631 aaKnown RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 EBF2Q9HAK2 575 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 SGK2Q9HBY8 427 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 OSGEPQ9NPF4 335 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 TOR4AQ9NXH8 423 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 FBXL12Q9NXK8 326 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 TJP2Q9UDY2 1190 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 SLCO3A1Q9UIG8 710 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 ERVW-1Q9UQF0 538 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 APOBEC2Q9Y235 224 aaKnown RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 BTBD3Q9Y2F9 522 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 ANKRD6Q9Y2G4 727 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 PCDHGB2Q9Y5G2 931 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP28-215ENST00000545608 A0A1W2PP55 124 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 TYW5A2RUC4 315 aaKnown RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 FAM47DPA6NHR8 397 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 BECN2A8MW95 431 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 E5RJQ4 531 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 H0Y8X5 98 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 CAPN9O14815 690 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 MID1O15344 667 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 FLRT2O43155 660 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 SART1O43290 800 aaKnown RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 THAP12O43422 761 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 LUC7L3O95232 432 aaKnown RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 TRUB2O95900 331 aaKnown RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 ADH1BP00325 375 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 IGLV3-25P01717 112 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 ATXN1LP0C7T5 689 aaKnown RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 TACR2P21452 398 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 GRIA4P48058 902 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 NUMBP49757 651 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 GALCP54803 685 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 APBA1Q02410 837 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 EIF4EBP2Q13542 120 aaPredicted RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 CDH18Q13634 790 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 ELOAQ14241 798 aaKnown RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 TAF5Q15542 800 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 TEAD4Q15561 434 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 TTC31Q49AM3 519 aaPredicted RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 PRAMEF14Q5SWL7 426 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 KIAA0895LQ68EN5 471 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 USP30Q70CQ3 517 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 CHSY1Q86X52 802 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 MMAAQ8IVH4 418 aaKnown RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 WDTC1Q8N5D0 677 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 KDM1BQ8NB78 822 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 PTPRN2Q92932 1015 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 RPL10LQ96L21 214 aaKnown RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 MED15Q96RN5 788 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 CRACR2AQ9BSW2 395 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 THAP9Q9H5L6 903 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 KIAA1522Q9P206 1035 aaPredicted RBP8.75□□□□□ -1.01
USP28-215ENST00000545608 NCKAP1Q9Y2A7 1128 aa8.75□□□□□ -1.01
USP28-215ENST00000545608 MUC22E2RYF6 1773 aaPredicted RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 A0A1W2PPC4 97 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 TARSL2A2RTX5 802 aaKnown RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 C10orf142B7Z368 130 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 WNT9AO14904 365 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 MED7O43513 233 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 LZTS3O60299 673 aaPredicted RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 RNASEH1O60930 286 aaKnown RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 DKK1O94907 266 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 APOEP02649 317 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 WNT1P04628 370 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 SRPRAP08240 638 aaKnown RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 SLC9A1P19634 815 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 MZF1P28698 734 aaPredicted RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 GNA15P30679 374 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 SLC8A1P32418 973 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 CTSKP43235 329 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 STK19P49842 368 aaPredicted RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 YWHAZP63104 245 aaKnown RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 ECT2LQ008S8 904 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 IL9RQ01113 521 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 ARID5BQ14865 1188 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 SUZ12Q15022 739 aaKnown RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 CST6Q15828 149 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 MEA1Q16626 185 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 ARHGAP44Q17R89 818 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 NCEH1Q6PIU2 408 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 TMPRSS7Q7RTY8 843 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 CIR1Q86X95 450 aaPredicted RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 PROSER1Q86XN7 944 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 MARCH9Q86YJ5 346 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 CREBRFQ8IUR6 639 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 CCDC117Q8IWD4 279 aaPredicted RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 DEFB106AQ8N104 65 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 STK40Q8N2I9 435 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 ATP6V0D2Q8N8Y2 350 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 IGSF8Q969P0 613 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 BTN2A3PQ96KV6 586 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 SLC6A18Q96N87 628 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 CDC6Q99741 560 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 PRMT1Q99873 361 aaKnown RBP8.74□□□□□ -1.01
USP28-215ENST00000545608 ARHGAP9Q9BRR9 750 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms