RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PMM2O15305 246 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 RTN2O75298 545 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 PRB1P04280 392 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 SRPRAP08240 638 aaKnown RBP15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 GGCXP38435 758 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 NXPH1P58417 271 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 APBA1Q02410 837 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 POM121L1PQ3SYA9 428 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 CCDC40Q4G0X9 1142 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 KLHL10Q6JEL2 608 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 CXorf57Q6NSI4 855 aaKnown RBP15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 GJB7Q6PEY0 223 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 PDCD7Q8N8D1 485 aaKnown RBP15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 KDM1BQ8NB78 822 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 PIP4K2CQ8TBX8 421 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 FRS2Q8WU20 508 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 SMARCE1Q969G3 411 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 SERAC1Q96JX3 654 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 SLC4A5Q9BY07 1137 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 METTL14Q9HCE5 456 aaKnown RBP15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 CNTN6Q9UQ52 1028 aa15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 KNTC1P50748 2209 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 PPP1R3GB7ZBB8 358 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 RNF103O00237 685 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 LATO43561 262 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 RNASEH1O60930 286 aaKnown RBP15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 RFPL3O75679 317 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 ZIC2O95409 532 aaPredicted RBP15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 TRUB2O95900 331 aaKnown RBP15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 IL1BP01584 269 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 GOT1P17174 413 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 MAT2AP31153 395 aaKnown RBP15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 CCR5P51681 352 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 GCNT1Q02742 428 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 STILQ15468 1287 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 SFMBT2Q5VUG0 894 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 CCAR2Q8N163 923 aaKnown RBP15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 TSC1Q92574 1164 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 FAM131CQ96AQ9 280 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 ALG14Q96F25 216 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 INTS2Q9H0H0 1204 aaKnown RBP15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 CEP83Q9Y592 693 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 PTPRQQ9UMZ3 2332 aa15.96■□□□□ 0.15
CLSTN3-213ENST00000541953 SYNJ2BP-COX16A0A087WUM0 186 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 TYW5A2RUC4 315 aaKnown RBP15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 TLR4O00206 839 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 SDC3O75056 442 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 LDOC1O95751 146 aaPredicted RBP15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 ITGAVP06756 1048 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 KRT5P13647 590 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 ABCB4P21439 1286 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 C5AR1P21730 350 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 STX17P56962 302 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 TARDBPQ13148 414 aaKnown RBP eCLIP15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 HES3Q5TGS1 186 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 FBXL19Q6PCT2 694 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 SND1Q7KZF4 910 aaKnown RBP eCLIP15.95■□□□□ 0.141e-8■■■■□ 21.7
CLSTN3-213ENST00000541953 TMPRSS12Q86WS5 348 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 TRIM59Q8IWR1 403 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 ZNF557Q8N988 423 aaPredicted RBP15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 EHBP1Q8NDI1 1231 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 CEP63Q96MT8 703 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 DDX50Q9BQ39 737 aaKnown RBP15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 GDF3Q9NR23 364 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 COX16Q9P0S2 106 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 CTNND2Q9UQB3 1225 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 RAI2Q9Y5P3 530 aa15.95■□□□□ 0.14
CLSTN3-213ENST00000541953 BECN2A8MW95 431 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 KCNU1A8MYU2 1149 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 PSMA7O14818 248 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 LETM1O95202 739 aaPredicted RBP15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 ADH1BP00325 375 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 APOEP02649 317 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 SEMG2Q02383 582 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 KCNH2Q12809 1159 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 CNTN1Q12860 1018 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 PDCLQ13371 301 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 ELAVL3Q14576 367 aaKnown RBP15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 INAVAQ3KP66 663 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 AGBL4Q5VU57 503 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 OTUD1Q5VV17 481 aaPredicted RBP15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 FBXL22Q6P050 247 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 WDTC1Q8N5D0 677 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 NELFBQ8WX92 580 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 ZNF606Q8WXB4 792 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 DHTKD1Q96HY7 919 aaPredicted RBP15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 BTN2A3PQ96KV6 586 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 MYOCQ99972 504 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 POPDC2Q9HBU9 364 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 AJAP1Q9UKB5 411 aaPredicted RBP15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 PCDHGA1Q9Y5H4 931 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 ATP6V1DQ9Y5K8 247 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 SHROOM3Q8TF72 1996 aa15.94■□□□□ 0.14
CLSTN3-213ENST00000541953 TBC1D3DA0A087WVF3 549 aa15.93■□□□□ 0.14
CLSTN3-213ENST00000541953 TBC1D3IA0A087WXS9 549 aa15.93■□□□□ 0.14
CLSTN3-213ENST00000541953 TBC1D3EA0A087X179 549 aa15.93■□□□□ 0.14
CLSTN3-213ENST00000541953 TBC1D3KA0A087X1G2 549 aa15.93■□□□□ 0.14
CLSTN3-213ENST00000541953 TBC1D3FA6NER0 549 aaPredicted RBP15.93■□□□□ 0.14
CLSTN3-213ENST00000541953 TBC1D3LB9A6J9 549 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms