RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 RMDN3Q96TC7 470 aa9.67□□□□□ -0.86
CLIP1-214ENST00000540539 C7orf25Q9BPX7 421 aa9.67□□□□□ -0.86
CLIP1-214ENST00000540539 SPOCK3Q9BQ16 436 aa9.67□□□□□ -0.86
CLIP1-214ENST00000540539 TMEM121Q9BTD3 319 aa9.67□□□□□ -0.86
CLIP1-214ENST00000540539 RNF26Q9BY78 433 aaPredicted RBP9.67□□□□□ -0.86
CLIP1-214ENST00000540539 POLR1BQ9H9Y6 1135 aa9.67□□□□□ -0.86
CLIP1-214ENST00000540539 PLSCR3Q9NRY6 295 aa9.67□□□□□ -0.86
CLIP1-214ENST00000540539 NXF1Q9UBU9 619 aaKnown RBP9.67□□□□□ -0.86
CLIP1-214ENST00000540539 COG5Q9UP83 839 aa9.67□□□□□ -0.86
CLIP1-214ENST00000540539 ALG6Q9Y672 507 aa9.67□□□□□ -0.86
CLIP1-214ENST00000540539 ATAD5Q96QE3 1844 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 TRIM64A6NGJ6 449 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 PDPK1O15530 556 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 CCNKO75909 580 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SEMA3DO95025 777 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 UQCRFS1P1P0C7P4 283 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 TMEM253P0C7T8 217 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 HIBADHP31937 336 aaKnown RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 HTR2BP41595 481 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 GRIA1P42261 906 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 RAD23AP54725 363 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 TAP1Q03518 808 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 TARDBPQ13148 414 aaKnown RBP eCLIP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SELPLGQ14242 412 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 KIZQ2M2Z5 673 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 RNF207Q6ZRF8 634 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 UNC45BQ8IWX7 931 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 UBL4BQ8N7F7 174 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 ZSWIM2Q8NEG5 633 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 OLIG1Q8TAK6 271 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 LNX1Q8TBB1 728 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 C1orf54Q8WWF1 131 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SNX19Q92543 992 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 ZFYVE19Q96K21 471 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF512BQ96KM6 892 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 KLF6Q99612 283 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 GHITMQ9H3K2 345 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 LRRC19Q9H756 370 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 FANCFQ9NPI8 374 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 TNFRSF10DQ9UBN6 386 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SERPINB13Q9UIV8 391 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 PACSIN3Q9UKS6 424 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 CNOT11Q9UKZ1 510 aaKnown RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 ASTN2O75129 1339 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 KDM3AQ9Y4C1 1321 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SPDYE2BA6NHP3 402 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 LRRC72A6NJI9 287 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 BET1O15155 118 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 DHRS4L1P0CG22 281 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SPDYE6P0CI01 402 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 DLATP10515 647 aaKnown RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 UCHL3P15374 230 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 EEF1DP29692 281 aaKnown RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 AQP5P55064 265 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SLC13A2Q13183 592 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 PTK6Q13882 451 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 PPP2R5DQ14738 602 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 LLGL1Q15334 1064 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 MAPRE2Q15555 327 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 MGAT5BQ3V5L5 792 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 LEXMQ3ZCV2 418 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SPDYE2Q495Y8 402 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 SLC9A4Q6AI14 798 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 DPY19L2P1Q6NXN4 242 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 DCUN1D2Q6PH85 259 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 GALNT12Q8IXK2 581 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 FAM9CQ8IZT9 166 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF786Q8N393 782 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 GUF1Q8N442 669 aaKnown RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 TMEM102Q8N9M5 508 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 BANPQ8N9N5 519 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 GALNT11Q8NCW6 608 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 IDI2Q9BXS1 227 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 ANKRD60Q9BZ19 345 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 TRIM15Q9C019 465 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 ZC3H12CQ9C0D7 883 aaKnown RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 EPB41L4AQ9HCS5 686 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 KCND2Q9NZV8 630 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 PSMC3IPQ9P2W1 217 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 PTBP2Q9UKA9 531 aaKnown RBP9.66□□□□□ -0.86
CLIP1-214ENST00000540539 GMEB2Q9UKD1 530 aa9.66□□□□□ -0.86
CLIP1-214ENST00000540539 ARFGEF1Q9Y6D6 1849 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 TRAV6A0A075B6T7 132 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 PRSS51A0A1B0GVH4 220 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 RIMBP2O15034 1052 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 ADAMTS3O15072 1205 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 YKT6O15498 198 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 OR7A10O76100 309 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 KCNK2O95069 426 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 HLA-DRAP01903 254 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 TRAPPC10P48553 1259 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 ALDH7A1P49419 539 aaKnown RBP9.65□□□□□ -0.86
CLIP1-214ENST00000540539 MARSP56192 900 aaKnown RBP9.65□□□□□ -0.86
CLIP1-214ENST00000540539 OCA2Q04671 838 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 RAD51Q06609 339 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 GRSF1Q12849 480 aaKnown RBP eCLIP9.65□□□□□ -0.86
CLIP1-214ENST00000540539 PDIA2Q13087 525 aaKnown RBP9.65□□□□□ -0.86
CLIP1-214ENST00000540539 PEX6Q13608 980 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 IKBKEQ14164 716 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 ZFP1Q6P2D0 407 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms