RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TMPRSS4Q9NRS4 437 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 IGSF9Q9P2J2 1179 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ANGPTL2Q9UKU9 493 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 TYW5A2RUC4 315 aaKnown RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 CXorf49A8MYA2 514 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 PTGESO14684 152 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ZBTB24O43167 697 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 RASSF9O75901 435 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 CSH1P0DML2 217 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 CSH2P0DML3 217 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ELF1P32519 619 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 FAM171A1Q5VUB5 890 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 MPP5Q8N3R9 675 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 RYBPQ8N488 228 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 DENND1AQ8TEH3 1009 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 RTP4Q96DX8 246 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 SIGLEC10Q96LC7 697 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 UBE2OQ9C0C9 1292 aaKnown RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 CPSF2Q9P2I0 782 aaKnown RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 HAS3O00219 553 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 TP73O15350 636 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 BEST1O76090 585 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 AP2A1O95782 977 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 SLC4A1P02730 911 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 CDK7P50613 346 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 RENBPP51606 427 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 SLC10A2Q12908 348 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ITGA9Q13797 1035 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 C17orf99Q6UX52 265 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 TAC4Q86UU9 113 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 RFWD2Q8NHY2 731 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 TBL1YQ9BQ87 522 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 TBC1D13Q9NVG8 400 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ADAM28Q9UKQ2 775 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 EVPLQ92817 2033 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 COL11A1P12107 1806 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 TGDSO95455 350 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 PTPN3P26045 913 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 YWHAQP27348 245 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 SP3Q02447 781 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 FCRL2Q96LA5 508 aaPredicted RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 ZNF512Q96ME7 567 aaPredicted RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 GTSE1Q9NYZ3 720 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 SFMBT1Q9UHJ3 866 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 ACOT9Q9Y305 439 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 MFHAS1Q9Y4C4 1052 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 A0A0U1RQF3 1178 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 SLC12A8A0AV02 714 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 BPGMP07738 259 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 KRT16P08779 473 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 ELNP15502 786 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 PRKCHP24723 683 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 HCAR3P49019 387 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 PITX1P78337 314 aaPredicted RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 BFSP2Q13515 415 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 PAFAH1B3Q15102 231 aaKnown RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 MARC1Q5VT66 337 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 TFAP2DQ7Z6R9 452 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 TEX9Q8N6V9 391 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 CXorf38Q8TB03 319 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 MICAL1Q8TDZ2 1067 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 TSPAN17Q96FV3 270 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 BTBD10Q9BSF8 475 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 THTPAQ9BU02 230 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 ILKAPQ9H0C8 392 aaPredicted RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 NT5MQ9NPB1 228 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 ENTPD7Q9NQZ7 604 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 GOLGA8TH3BQL2 631 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 UGT1A9O60656 530 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 PAGE1O75459 146 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 VAPBO95292 243 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 STMN1P16949 149 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 ETFBP38117 255 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 EPHB1P54762 984 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 SLC18A2Q05940 514 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 CCDC142Q17RM4 750 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 RSPH1Q8WYR4 309 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 N4BP2L2Q92802 583 aaPredicted RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 UGT1A7Q9HAW7 530 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 UGT1A10Q9HAW8 530 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 UGT1A8Q9HAW9 530 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 TLR8Q9NR97 1041 aaKnown RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 RUVBL2Q9Y230 463 aaKnown RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 CHKBQ9Y259 395 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 MRPL42Q9Y6G3 142 aaKnown RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 DOCK5Q9H7D0 1870 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 PABPN1LA6NDY0 278 aaKnown RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 FAM159BA6NKW6 160 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 H7C4K7 107 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 ADCY6O43306 1168 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 LAMB3Q13751 1172 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 RPS6KA2Q15349 733 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 MMEL1Q495T6 779 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 PCID2Q5JVF3 399 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 MARK2Q7KZI7 788 aaKnown RBP11□□□□□ -0.65
CLIP1-213ENST00000540338 LRRC49Q8IUZ0 686 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 RAB3IL1Q8TBN0 382 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 CMTM5Q96DZ9 223 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 SIKE1Q9BRV8 207 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 TBC1D10AQ9BXI6 508 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms