RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 CDH4P55283 916 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 ADCY2Q08462 1091 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 MTA1Q13330 715 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 TAZQ16635 292 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 PTPRNQ16849 979 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 PPP6R3Q5H9R7 873 aaPredicted RBP13.36□□□□□ -0.27
CCDC42-202ENST00000539522 RABGAP1LQ5R372 815 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 LRRC38Q5VT99 294 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 AFMIDQ63HM1 303 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 RFX8Q6ZV50 586 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 BMP8AQ7Z5Y6 402 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 MFN1Q8IWA4 741 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 ARHGAP12Q8IWW6 846 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 PQLC3Q8N755 202 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 TMEM105Q8N8V8 129 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 PCDH19Q8TAB3 1148 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 FAF2Q96CS3 445 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 TBC1D31Q96DN5 1066 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 MRGPRX3Q96LB0 322 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 CSPG4P5Q96PW8 444 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 ACOX2Q99424 681 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 NAPGQ99747 312 aaPredicted RBP13.36□□□□□ -0.27
CCDC42-202ENST00000539522 SLC2A11Q9BYW1 496 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 CD248Q9HCU0 757 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 TMEM248Q9NWD8 314 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 DEC1Q9P2X7 70 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 GGA2Q9UJY4 613 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 MAN2B1O00754 1011 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 FANCGO15287 622 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 CLDN11O75508 207 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 FTCDO95954 541 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 CD160O95971 181 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 CYBBP04839 570 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 DCNP07585 359 aaKnown RBP13.35□□□□□ -0.27
CCDC42-202ENST00000539522 PABPC1P11940 636 aaKnown RBP13.35□□□□□ -0.27
CCDC42-202ENST00000539522 HNRNPLP14866 589 aaKnown RBP eCLIP13.35□□□□□ -0.27
CCDC42-202ENST00000539522 PRLRP16471 622 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 ERCC2P18074 760 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 AOC1P19801 751 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 AMPD1P23109 780 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 KDELR1P24390 212 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 CTNNA1P35221 906 aaKnown RBP13.35□□□□□ -0.27
CCDC42-202ENST00000539522 ACVRL1P37023 503 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 GRIA2P42262 883 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 HCAR3P49019 387 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 PLK1P53350 603 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 UBXN2BQ14CS0 331 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 TTC39BQ5VTQ0 682 aaPredicted RBP13.35□□□□□ -0.27
CCDC42-202ENST00000539522 DCAF12L1Q5VU92 463 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 EGFLAMQ63HQ2 1017 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 GRAMD4Q6IC98 578 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 AADACL2Q6P093 401 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 DAAM2Q86T65 1068 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 RTL3Q8N8U3 475 aaKnown RBP13.35□□□□□ -0.27
CCDC42-202ENST00000539522 FLCNQ8NFG4 579 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 XPO6Q96QU8 1125 aaKnown RBP13.35□□□□□ -0.27
CCDC42-202ENST00000539522 NCAPGQ9BPX3 1015 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 STARD13Q9Y3M8 1113 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 ACTL7AQ9Y615 435 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 CKAP5Q14008 2032 aa13.35□□□□□ -0.27
CCDC42-202ENST00000539522 MYO18AQ92614 2054 aaKnown RBP13.35□□□□□ -0.27
CCDC42-202ENST00000539522 H0Y626 953 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 EEF2KO00418 725 aaKnown RBP13.34□□□□□ -0.27
CCDC42-202ENST00000539522 ADAM23O75077 832 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 RNF40O75150 1001 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 ZMPSTE24O75844 475 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 URI1O94763 535 aaPredicted RBP13.34□□□□□ -0.27
CCDC42-202ENST00000539522 DRD1P21728 446 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 CTNNA2P26232 953 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 EPHB2P29323 1055 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 SSR1P43307 286 aaKnown RBP13.34□□□□□ -0.27
CCDC42-202ENST00000539522 CDH6P55285 790 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 SEC13P55735 322 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 PLEKHG6Q3KR16 790 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 PITRM1Q5JRX3 1037 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 ACBD5Q5T8D3 534 aaPredicted RBP13.34□□□□□ -0.27
CCDC42-202ENST00000539522 PAPD7Q5XG87 772 aaKnown RBP13.34□□□□□ -0.27
CCDC42-202ENST00000539522 RWDD4Q6NW29 188 aaKnown RBP13.34□□□□□ -0.27
CCDC42-202ENST00000539522 MFSD7Q6UXD7 560 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 LRRC31Q6UY01 552 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 RHOT1Q8IXI2 618 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 OR7D4Q8NG98 312 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 USP33Q8TEY7 942 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 TTC17Q96AE7 1141 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 VOPP1Q96AW1 172 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 HES6Q96HZ4 224 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 FEM1AQ9BSK4 669 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 OSBPL6Q9BZF3 934 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 LRRC19Q9H756 370 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 LMAN1LQ9HAT1 526 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 PCDHA3Q9Y5H8 950 aa13.34□□□□□ -0.27
CCDC42-202ENST00000539522 MYO15AQ9UKN7 3530 aa13.33□□□□□ -0.28
CCDC42-202ENST00000539522 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.33□□□□□ -0.28
CCDC42-202ENST00000539522 WASH3PC4AMC7 463 aa13.33□□□□□ -0.28
CCDC42-202ENST00000539522 PSTPIP1O43586 416 aa13.33□□□□□ -0.28
CCDC42-202ENST00000539522 SPOPO43791 374 aa13.33□□□□□ -0.28
CCDC42-202ENST00000539522 SNAP91O60641 907 aa13.33□□□□□ -0.28
CCDC42-202ENST00000539522 KRT7P08729 469 aa13.33□□□□□ -0.28
CCDC42-202ENST00000539522 CDKN2BP42772 138 aa13.33□□□□□ -0.28
CCDC42-202ENST00000539522 TNFRSF4P43489 277 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms