RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 PCMTD2Q9NV79 361 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 COMMD8Q9NX08 183 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SYBUQ9NX95 663 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SIRPGQ9P1W8 387 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 VANGL2Q9ULK5 521 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 GABRQQ9UN88 632 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 CHKBQ9Y259 395 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 INPP5FQ9Y2H2 1132 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 MFHAS1Q9Y4C4 1052 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 TIMM13Q9Y5L4 95 aaPredicted RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 RPS6KL1Q9Y6S9 549 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 GREB1Q4ZG55 1949 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 MYLKQ15746 1914 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 A0A0G2JND7 137 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 WDR91A4D1P6 747 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ARHGAP42A6NI28 874 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 OR6C75A6NL08 312 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 WASH4PA8MWX3 477 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 KCNK1O00180 336 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 TRAFD1O14545 582 aaPredicted RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 HOXA2O43364 376 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 CACNG3O60359 315 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 MGEA5O60502 916 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 CCDC22O60826 627 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 NEBLO76041 1014 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 LRIG2O94898 1065 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 OAZ2O95190 189 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 MPOP05164 745 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 BPGMP07738 259 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ITGA2BP08514 1039 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 PAMP19021 973 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 NFKB1P19838 968 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 BGNP21810 368 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 DNAJB1P25685 340 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 GRIK1P39086 918 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 BRCC3P46736 316 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 POLD2P49005 469 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 HK2P52789 917 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ACLYP53396 1101 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 LIMK2P53671 638 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 CACNA2D1P54289 1103 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 PRKAA2P54646 552 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 PDE1BQ01064 536 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 SP3Q02447 781 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ZBTB16Q05516 673 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 DSC1Q08554 894 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ELAVL2Q12926 359 aaKnown RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 EIF4EBP2Q13542 120 aaPredicted RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 BMPR2Q13873 1038 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 KRT72Q14CN4 511 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ARHGEF6Q15052 776 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 SWT1Q5T5J6 900 aaKnown RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 MAP3K21Q5TCX8 1036 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 MROH9Q5TGP6 573 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 KCTD11Q693B1 232 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 TBC1D1Q86TI0 1168 aaPredicted RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 TMEM135Q86UB9 458 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 MON1AQ86VX9 555 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 WDR75Q8IWA0 830 aaKnown RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 MPP5Q8N3R9 675 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ARMC2Q8NEN0 867 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 OR10T2Q8NGX3 314 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ADAM32Q8TC27 787 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 PPP4R1Q8TF05 950 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 SH3TC2Q8TF17 1288 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 C2orf15Q8WU43 125 aaKnown RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 ARNTL2Q8WYA1 636 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 SPOCK2Q92563 424 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 EDEM1Q92611 657 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 SKA1Q96BD8 255 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ZNF669Q96BR6 464 aaPredicted RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 OXNAD1Q96HP4 312 aaPredicted RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 C8orf48Q96LL4 319 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 C1orf74Q96LT6 269 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 TSNARE1Q96NA8 513 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 RBBP8Q99708 897 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 CFHR5Q9BXR6 569 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ZCWPW1Q9H0M4 648 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ELAC1Q9H777 363 aaKnown RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 MRM3Q9HC36 420 aaKnown RBP6.78□□□□□ -1.32
USP28-206ENST00000538224 TBC1D13Q9NVG8 400 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 SOX13Q9UN79 622 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 SORCS3Q9UPU3 1222 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 SCML2Q9UQR0 700 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 ANKRD6Q9Y2G4 727 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 VWA8A3KMH1 1905 aa6.78□□□□□ -1.32
USP28-206ENST00000538224 TMEM88BA6NKF7 163 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 FAM72CH0Y354 149 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TNFRSF10BO14763 440 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TPP1O14773 563 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 MATN3O15232 486 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 ZBTB24O43167 697 aaPredicted RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 SNNO75324 88 aaPredicted RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 SNUPNO95149 360 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 RTN3O95197 1032 aaPredicted RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 LMNAP02545 664 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 SERPINE1P05121 402 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CKBP12277 381 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 MYL4P12829 197 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CALB2P22676 271 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms