RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 PRKCQQ04759 706 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 NIPAL4Q0D2K0 466 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 AP3B2Q13367 1082 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 SLC30A10Q6XR72 485 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 LYSMD3Q7Z3D4 306 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 ZBTB46Q86UZ6 589 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 ZC3H3Q8IXZ2 948 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 CLIP4Q8N3C7 705 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 FIBCD1Q8N539 461 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 C7orf31Q8N865 590 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 FAM47BQ8NA70 645 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 CD101Q93033 1021 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 TMA16Q96EY4 203 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 GMCL1Q96IK5 515 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 ABHD16BQ9H3Z7 469 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 PPME1Q9Y570 386 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF536O15090 1300 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 CDK2AP1O14519 115 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 SNPHO15079 494 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 TOM1L1O75674 476 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 TXNP10599 105 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 CPT1AP50416 773 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 ARSEP51690 589 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 ATN1P54259 1190 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 NFATC3Q12968 1075 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 SPOUT1Q5T280 376 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 PDPK2PQ6A1A2 396 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 CATSPER3Q86XQ3 398 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 TIAM2Q8IVF5 1701 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 SPARTQ8N0X7 666 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 CACTIN-AS1Q8N1I8 211 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 ZCCHC7Q8N3Z6 543 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 GMCL1P1Q8NEA9 526 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 HCAR2Q8TDS4 363 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 PDCD6IPQ8WUM4 868 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 HEMGNQ9BXL5 484 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 HOXD1Q9GZZ0 328 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 INTS2Q9H0H0 1204 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 ACSS3Q9H6R3 686 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF112Q9UJU3 913 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 AJAP1Q9UKB5 411 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 SHOC2Q9UQ13 582 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 KRT37O76014 449 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 SUPT20HL2P0C7V6 817 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 SLX4IPQ5VYV7 408 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF276Q8N554 614 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 RTKNQ9BST9 563 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 XPNPEP3Q9NQH7 507 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 DIABLOQ9NR28 239 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 COPG2Q9UBF2 871 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 KCNN3Q9UGI6 736 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 RNF11Q9Y3C5 154 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 ATRNL1Q5VV63 1379 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 EML1O00423 815 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 GSNP06396 782 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 GFAPP14136 432 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 PSMC2P35998 433 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 HPCAL1P37235 193 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 NR4A2P43354 598 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 TFDP1Q14186 410 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 PPP2R5DQ14738 602 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 PPP1R18Q6NYC8 613 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 TATDN1Q6P1N9 297 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 CARM1Q86X55 608 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 CDAN1Q8IWY9 1227 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 SNX31Q8N9S9 440 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 BHLHE22Q8NFJ8 381 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 ZBED3Q96IU2 234 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 PKP2Q99959 881 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 SUCOQ9UBS9 1254 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 APEX2Q9UBZ4 518 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 CCDC88AQ3V6T2 1871 aa11.1□□□□□ -0.63
CLSTN3-207ENST00000537408 FADS2P1A8MWK0 482 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 INHAP05111 366 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 ELNP15502 786 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF182P17025 639 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 P2RX3P56373 397 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 MYL7Q01449 175 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 CLEC16AQ2KHT3 1053 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 CDONQ4KMG0 1287 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 XKR9Q5GH70 373 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 OTOP1Q7RTM1 612 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 RIOX2Q8IUF8 465 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 Q8N9G6 341 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 DEPDC7Q96QD5 511 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 FAM25AB3EWG3 89 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 FAM25CB3EWG5 89 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 FAM25GB3EWG6 89 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 KPNA6O60684 536 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 CXCR2P25025 360 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 RAD23AP54725 363 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 NLRP11P59045 1033 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 PRKCZQ05513 592 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 TMEM119Q4V9L6 283 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 KIAA1841Q6NSI8 718 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 SLC35C1Q96A29 364 aa11.09□□□□□ -0.63
CLSTN3-207ENST00000537408 DNAJC19Q96DA6 116 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms